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Navigation: Todo list / Versions / Bugs and QA Checks / Derivatives

The maintainer dashboard exposes information about teams or maintainers' packages. It intends to help answering the question I have a few hours for Debian, what should I do now?. Fill in one or more email addresses in the form below to check it out; for example here is the accessibility team todo list.

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Todo list

type source description hide
RC bug pbcopper RC bug needs fixing: #852654: src:pbcopper: no point to releasing it without `unanimity` hide
RC bug ori RC bug needs fixing: #828481: ori: FTBFS with openssl 1.1.0 hide
RC bug gridengine RC bug marked as done but still affects unstable: #903406: gridengine: FTBFS on armhf due to OpenJDK VM changes hide
RC bug gridengine RC bug needs fixing: #875404: FTBFS with Java 9: sun.rmi.server hide
RC bug pbbam RC bug needs fixing: #909071: pbbam: FTBFS on every release architecture where it previously built hide
RC bug falcon RC bug needs fixing: #902132: falcon: FTBFS since python-networkx version 2.1-1; fails in test suite hide
RC bug blasr RC bug needs fixing: #906811: FTBFS: libconfig.h: No such file or directory hide
RC bug python-cobra RC bug needs fixing: #904709: python-cobra ftbfs (test failures) hide
missing build gridengine Missing build on amd64: state Failed since 2018-08-22 hide
missing build gridengine Missing build on arm64: state Failed since 2018-08-22 hide
missing build gridengine Missing build on armel: state Failed since 2018-08-22 hide
missing build gridengine Missing build on armhf: state Failed since 2018-08-22 hide
missing build gridengine Missing build on i386: state Failed since 2018-08-22 hide
missing build gridengine Missing build on mips: state Failed since 2018-08-22 hide
missing build gridengine Missing build on mips64el: state Failed since 2018-08-22 hide
missing build gridengine Missing build on mipsel: state Failed since 2018-08-22 hide
missing build gridengine Missing build on ppc64el: state Failed since 2018-08-22 hide
missing build gridengine Missing build on s390x: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on amd64: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on arm64: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on armel: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on armhf: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on i386: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on mips: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on mips64el: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on mipsel: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on ppc64el: state Failed since 2018-08-22 hide
missing build python-cobra Missing build on s390x: state Failed since 2018-08-22 hide
missing build pbbam Missing build on arm64: state Build-Attempted since 2018-09-07 hide
missing build pbbam Missing build on mips64el: state Build-Attempted since 2018-09-07 hide
missing build pbbam Missing build on ppc64el: state Build-Attempted since 2018-09-07 hide
testing migration blasr Migration: Not in testing for 80 days hide
testing migration circlator Migration: Not in testing for 14 days hide
testing migration falcon Migration: Not in testing for 49 days hide
testing migration gridengine Migration: Not in testing for 294 days hide
testing migration ori Migration: Not in testing for 299 days hide
testing migration pbalign Migration: Not in testing for 80 days hide
testing migration pbbam Migration: Has been trying to migrate for 17 days hide
testing migration pbcopper Migration: Not in testing for 603 days hide
testing migration pbdagcon Migration: Not in testing for 80 days hide
testing migration pbgenomicconsensus Migration: Not in testing for 80 days hide
testing migration pbh5tools Migration: Not in testing for 80 days hide
testing migration pbseqlib Migration: Not in testing for 80 days hide
testing migration pbsuite Migration: Not in testing for 80 days hide
testing migration python-cobra Migration: Not in testing for 30 days hide
testing migration smrtanalysis Migration: Not in testing for 80 days hide
vcs singularity-container New version: ready for upload hide
new upstream falcon New version available: 2.1.4 hide
uscan error gridengine debian/watch: uscan returned an error: unrecognised option hide
new upstream optlang New version available: 1.4.3 hide
uscan error pbalign debian/watch: uscan returned an error: uscan returned an empty output hide
uscan error pbdagcon debian/watch: uscan returned an error: uscan returned an empty output hide
new upstream pbgenomicconsensus New version available: 2.3.2 hide
new upstream python-cobra New version available: 0.13.4 hide
uscan error python-easydev debian/watch: uscan returned an error: uscan returned an empty output hide
uscan error python-et-xmlfile debian/watch: uscan returned an error: In debian/watch no matching files for watch line https://bitbucket.org/openpyxl/et_xmlfile/downloads (?:.*?/)?v?(\d[\d.]*)\.tar\.bz2 debian uupdate hide
new upstream swiglpk New version available: 4.65.0 hide
uscan error blasr debian/watch: uscan returned an error: uscan returned an empty output hide
new upstream pbbam New version available: 0.19.0 hide
new upstream python-pbcore New version available: 1.5.0+git20180914.c3412eb hide
uscan error python-intervaltree-bio debian/watch: uscan returned an error: In debian/watch no matching files for watch line https://github.com/konstantint/intervaltree-bio/tags (?:.*?/)?v?(\d[\d.]*)\.tar\.gz hide
new upstream consensuscore New version available: 1.1.1 hide
new upstream python-bx New version available: 0.8.2 hide
new upstream python-pbcommand New version available: 1.1.1 hide
new upstream singularity-container New version available: 2.6.0 hide
new upstream phyx New version available: 0.999 hide

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Versions

source jessie stretch buster sid experimental vcs upstream mentors
adduser 3.113+nmu3   3.115   3.118     3.118      
artemis bpo: 16.0.0+dfsg-4~bpo8+1   16.0.17+dfsg-1   17.0.1+dfsg-1     17.0.1+dfsg-1   17.0.1    
assemblytics   0~20170131+ds-2     0~20170131+ds-2      
bcftools bpo: 1.3.1-1~bpo8+2   1.3.1-1
bpo: 1.8-1~bpo9+1  
1.9-1     1.9-1   1.9    
blasr bpo: 5.3+0-1~bpo8+1   5.3+0-1     5.3+0-2     5.3.2-1   error    
canu   1.7.1+dfsg-1     1.7.1+dfsg-1   1.7.1    
circlator bpo: 1.4.0-1~bpo8+1   1.4.1-1     1.5.5-1     1.5.5-1   1.5.5    
consensuscore bpo: 1.0.2-1~bpo8+1   1.0.2-2   1.0.2-3     1.0.2-3   1.1.1    
daligner bpo: 1.0+20160927-1~bpo8+1   1.0+20161119-1   1.0+20180108-1     1.0+20180108-1   1.0    
dascrubber bpo: 0~20160601-1~bpo8+1   0~20160601-2   0~20180108-1     0~20180108-1   0.No-Release    
dazzdb bpo: 1.0+20160930-1~bpo8+1   1.0+20161112-2   1.0+20180115-1     1.0+20180115-1   1.0    
falcon bpo: 1.8.4-1~bpo8+1   1.8.6-1.1     1.8.8-1     2.1.4-1   2.1.4    
fast5 bpo: 0.5.8-1~bpo8+1   0.5.8-1
bpo: 0.6.5-1~bpo9+1  
0.6.5-1     0.6.5-1   0.6.5    
gridengine bpo: 8.1.9+dfsg-1~bpo8+1   8.1.9+dfsg-4+deb9u2     8.1.9+dfsg-8     8.1.9+dfsg-8   error    
hinge   0.5.0-3     0.5.0-3   0.5.0    
kineticstools bpo: 0.5.1+20150828+git3aa3d96+dfsg-1~bpo8+1   0.6.1+20161222-1     0.6.1+20161222-1   0.No-Track    
kmer bpo: 0~20150903+r2013-3~bpo8+1   0~20150903+r2013-3   0~20150903+r2013-6     0~20150903+r2013-6   0.No-Release    
mhap bpo: 2.1.1+dfsg-1~bpo8+1   2.1.1+dfsg-1   2.1.3+dfsg-1     2.1.3+dfsg-1   2.1.3    
nanopolish bpo: 0.5.0-1~bpo8+1   0.5.0-1
bpo: 0.9.0-1~bpo9+1  
0.10.2-1     0.10.2-1   0.10.2    
optlang   1.4.1-1     1.4.1-1   1.4.3    
ori bpo: 0.8.1+ds1-1~bpo8+1   0.8.1+ds1-3     0.8.1+ds1-3     0.8.1+ds1-3   0.8.1    
pbalign bpo: 0.2.0-1~bpo8+1   0.3.0-1     0.3.0-1     0.3.0-1   error    
pbbam bpo: 0.7.4+ds-1~bpo8+1   0.7.4+ds-1   0.18.0+dfsg-1     0.18.0+dfsg-1   0.19.0    
pbcopper   0.4.1+dfsg-1     0.4.1+dfsg-1   0.4.1    
pbdagcon bpo: 0.3+20161121+ds-1~bpo8+1   0.3+20161121+ds-1     0.3+20161121+ds-1     0.3+git20180411.c14c422+ds-1   error    
pbgenomicconsensus bpo: 2.0.0+20151210-1~bpo8+1   2.1.0-1     2.1.0-1     2.2.2-1   2.3.2    
pbh5tools bpo: 0.8.0+dfsg-5~bpo8+1   0.8.0+dfsg-5     0.8.0+git20170929.58d54ff+dfsg-1     0.8.0+git20170929.58d54ff+dfsg-1   0.8.0+git20170929.58d54ff    
pbseqlib bpo: 0~20161219-1~bpo8+1   0~20161219-1     5.3.1+dfsg-1     5.3.1+dfsg-1   5.3.1    
pbsuite bpo: 15.8.24+dfsg-2~bpo8+1   15.8.24+dfsg-2     15.8.24+dfsg-3     15.8.24+dfsg-3   15.8.24    
phyx   0.99+ds-1     0.99+ds-1   0.999    
poretools bpo: 0.5.1-1~bpo8+1   0.6.0+dfsg-2   0.6.0+dfsg-3     0.6.0+dfsg-3   0.6.0    
pyconfigure bpo: 0.2.3-1~bpo8+1   0.2.3-1   0.2.3-2     0.2.3-2   0.2.3    
python-avro bpo: 1.8.1+dfsg-1~bpo8+1   1.8.1+dfsg-1   1.8.2+dfsg-1     1.8.2+dfsg-1   1.8.2    
python-bx   0.8.1-2     0.8.1-1   0.8.2    
python-cobra bpo: 0.5.4-1~bpo8+1   0.5.9-1     0.5.9-1     0.13.3-1   0.13.4    
python-colormap   1.0.1-2     1.0.1    
python-easydev   0.9.35+dfsg-2     0.9.35+dfsg-2   error    
python-et-xmlfile   1.0.1-2     1.0.1-2   error    
python-intervaltree-bio   1.0.1-1   1.0.1-2     1.0.1-2   error    
python-pbcommand bpo: 0.2.17-1~bpo8+1   0.5.3-1     0.5.3-1   1.1.1    
python-pbcore bpo: 1.2.7+dfsg-2~bpo8+1   1.2.11+dfsg-1   1.5.0+git20180606.43fcd9d+dfsg-2     1.5.0+git20180606.43fcd9d+dfsg-3   1.5.0+git20180914.c3412eb    
python-pymummer bpo: 0.9.0-1~bpo8+1
bpo-sl: 0.10.2-1~bpo8+1  
0.10.1-1   0.10.3-1     0.10.3-1   0.10.3    
python-pysam 0.7.7-1
bpo: 0.9.1.4+ds-1~bpo8+1  
0.10.0+ds-2
bpo: 0.14+ds-2~bpo9+1  
0.14+ds-2   0.15.1+ds-1     0.15.1+ds-1   0.15.1    
qperf   0.4.11-1     0.4.11-1   0.4.11    
singularity-container bpo: 2.2-2~bpo8+1
bpo-sl: 2.5.2-1~bpo8+1  
bpo: 2.5.2-1~bpo9+1   2.5.2-2     2.5.2-3   2.6.0    
smalr   1.1+dfsg-1     1.1+dfsg-1   1.1    
smrtanalysis bpo: 0~20161126~bpo8+1   0~20161126     0~20180814     0~20180814      
sniffles bpo: 1.0.1+ds-1~bpo8+1   1.0.2+ds-1   1.0.8+ds-2     1.0.8+ds-2   1.0.8    
spades bpo: 3.9.0+dfsg-1~bpo8+1
bpo-sl: 3.10.1+dfsg-3~bpo8+1  
3.9.1+dfsg-1   3.12.0+dfsg-1     3.12.0+dfsg-1   3.12.0    
sprai bpo: 0.9.9.18+dfsg-1~bpo8+1   0.9.9.22+dfsg-1   0.9.9.23+dfsg-1     0.9.9.23+dfsg-1   0.9.9.23    
swiglpk   1.4.4-2     1.4.4-2   4.65.0    
trnascan-se   2.0.0-3     2.0.0-3   2.0.0    

Bugs, security issues and Quality Assurance Checks

source bugs lintian (un)reproducible piuparts ci security URLs
(duck)
all RC patch pending E W I P X O sid/amd64 jes str sid
adduser 86 bugs graph 10 23   pass          
artemis 0 bugs graph       1 27 buster/arm64:depwait buster/armhf:depwait              
assemblytics 0 bugs graph       3 1              
bcftools 4 bugs graph 8 35 1 1 1 buster/i386:FTBFS   pass          
blasr 1 bugs graph 1 1 5 20 3 1                
canu 0 bugs graph       2 18 1 buster/arm64:depwait buster/armhf:depwait buster/i386:depwait              
circlator 0 bugs graph       2 1 2     pass          
consensuscore 0 bugs graph       2 1 buster/i386:FTBR   fail          
daligner 0 bugs graph       2 23 3 10              
dascrubber 0 bugs graph       2 17 2 8              
dazzdb 0 bugs graph       2 41 3 20              
falcon 1 bugs graph 1 3 48 10 3 11     fail          
fast5 0 bugs graph       4 1 2   pass          
gridengine 15 bugs graph 1 1 4 5 297 8 12 22                
hinge 0 bugs graph       2 9 7 1 buster/armhf:depwait buster/i386:depwait              
kineticstools 1 bugs graph 3 3 3 buster/armhf:depwait buster/i386:depwait   pass          
kmer 0 bugs graph       1 3 2   pass          
mhap 0 bugs graph       2 2 3 buster/arm64:depwait buster/armhf:depwait buster/i386:depwait              
nanopolish 0 bugs graph       1 4 2   pass          
optlang 0 bugs graph       3 1 1              
ori 3 bugs graph 1 1 2 7 3     neutral         fail
pbalign 0 bugs graph       1 4 2 4 3                
pbbam 3 bugs graph 1 8 6 8 1 1 buster/armhf:FTBFS buster/i386:FTBFS stable2sid stable22sid fail          
pbcopper 1 bugs graph 1 1 2 1                
pbdagcon 0 bugs graph       3 3 3 1                
pbgenomicconsensus 0 bugs graph       3 2 3 2 2     pass          
pbh5tools 0 bugs graph       2 1 3 1     pass          
pbseqlib 0 bugs graph       8 6 7 4 1                
pbsuite 0 bugs graph       3 4 1     fail          
phyx 0 bugs graph       1 71 1 9              
poretools 0 bugs graph       1 2 1 1              
pyconfigure 0 bugs graph       2 2 1 2             fail
python-avro 0 bugs graph       2 1 5 3              
python-bx 0 bugs graph       95 156 4 5 94              
python-cobra 1 bugs graph 1 4 6 3 2 2     fail          
python-colormap 0 bugs graph       1 2 1              
python-easydev 0 bugs graph       6 3 17 5              
python-et-xmlfile 0 bugs graph       2 1 2 1             fail
python-intervaltree-bio 0 bugs graph       2 1   pass          
python-pbcommand 0 bugs graph       4 1 3 1 buster/armhf:depwait buster/i386:depwait   pass          
python-pbcore 1 bugs graph 1 3 3 buster/armhf:depwait buster/i386:depwait   pass          
python-pymummer 0 bugs graph       2 1 2 1   pass          
python-pysam 0 bugs graph       2 18 3 11 15 buster/armhf:FTBFS buster/i386:depwait   pass          
qperf 0 bugs graph       1 4 2              
singularity-container 0 bugs graph       2 55 5 19 6              
smalr 0 bugs graph       1 1 2 2 buster/armhf:depwait buster/i386:depwait   pass          
smrtanalysis 0 bugs graph       1 1                
sniffles 0 bugs graph       2 3 2 1   pass         fail
spades 1 bugs graph 1 2 1 1 buster/arm64:depwait buster/armhf:depwait buster/i386:depwait   pass          
sprai 0 bugs graph       2 2 6 3 5 1              
swiglpk 0 bugs graph       8 1 1              
trnascan-se 0 bugs graph       4 1 2 1                

Derivatives

source Ubuntu Debian
links bugs patches bionic (stable) cosmic (devel) sid
adduser LP 43 4 3.116ubuntu1  3.117ubuntu1  3.118 
bcftools LP 1   1.7-2  1.8-1  1.9-1 
circlator LP     1.5.5-1    1.5.5-1 
falcon LP     1.8.8-1ubuntu1  1.8.8-1ubuntu1  1.8.8-1 
fast5 LP     0.6.5-1  0.6.5-1build1  0.6.5-1 
gridengine LP 13 1 8.1.9+dfsg-7build1    8.1.9+dfsg-8 
kineticstools LP     0.6.1+20161222-1ubuntu1  0.6.1+20161222-1ubuntu1  0.6.1+20161222-1 
kmer LP     0~20150903+r2013-3  0~20150903+r2013-4  0~20150903+r2013-6 
nanopolish LP     0.9.0-1  0.9.0-1  0.10.2-1 
ori LP 1   0.8.1+ds1-3ubuntu2  0.8.1+ds1-3ubuntu2  0.8.1+ds1-3 
pbbam LP     0.7.4+ds-1build2  0.7.4+ds-1build2  0.18.0+dfsg-1 
pbgenomicconsensus LP     2.1.0-1    2.1.0-1 
pbsuite LP     15.8.24+dfsg-2    15.8.24+dfsg-3 
pyconfigure LP     0.2.3-1  0.2.3-1  0.2.3-2 
python-bx LP       0.8.1-2build1  0.8.1-2 
python-cobra LP     0.5.9-1build2  0.5.9-1build2
prop: 0.5.9-1build3 
0.5.9-1 
python-pysam LP     0.14+ds-2  0.14+ds-2build1  0.15.1+ds-1 
singularity-container LP 1   2.4.2-4  2.5.2-2 
smrtanalysis LP     0~20161126    0~20180814 
spades LP     3.11.1+dfsg-1 
prop: 3.12.0+dfsg-1 
3.12.0+dfsg-1 
swiglpk LP     1.4.4-2  1.4.4-2build1  1.4.4-2 
trnascan-se LP     1.3.1-1  1.3.1-1
prop: 2.0.0-1ubuntu1 
2.0.0-3 

Packages without bugs, patches or a different version in a derivative are not listed.

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