Maintainer dashboard

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The maintainer dashboard exposes information about teams or maintainers' packages. It intends to help answering the question I have a few hours for Debian, what should I do now?. Fill in one or more email addresses in the form below to check it out; for example here is the accessibility team todo list.

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Todo list

type source description hide
RC bug bedtools RC bug needs fixing: #890116: bedtools FTBFS on 32bit: Tools failing: coverage intersect negativecontrol reldist shuffle split hide
RC bug primer3 RC bug needs fixing: #890993: primer3 FTBFS on big endian: test failure hide
RC bug bedtools RC bug needs fixing: #890117: bedtools FTBFS on big endian: Tools failing: bamtobed bamtofastq coverage genomecov groupby intersect jaccard map merge multicov negativecontrol hide
security issue htslib Open security issue: CVE-2017-1000206 for stretch (high** urgency) hide
security issue staden-io-lib Open security issue: TEMP-0729276-2DADFA for wheezy (low urgency) hide
missing build bedtools Missing build on armel: state Build-Attempted since 2018-02-10 hide
missing build bedtools Missing build on armhf: state Build-Attempted since 2018-02-10 hide
missing build bedtools Missing build on i386: state Build-Attempted since 2018-02-10 hide
missing build bedtools Missing build on mips: state Build-Attempted since 2018-02-10 hide
missing build bedtools Missing build on mipsel: state Build-Attempted since 2018-02-10 hide
missing build bedtools Missing build on s390x: state Build-Attempted since 2018-02-10 hide
missing build primer3 Missing build on mips: state Build-Attempted since 2018-02-21 hide
missing build primer3 Missing build on s390x: state Build-Attempted since 2018-02-21 hide
testing migration bedtools Migration: Has been trying to migrate for 13 days hide
new upstream euca2ools New version available: 3.4.1 hide
new upstream mocker New version available: 1.1 hide
uscan error paraclu debian/watch: uscan returned an error: In debian/watch no matching files for watch line http://www.cbrc.jp/paraclu/paraclu-(.*).zip hide
uscan error muscle debian/watch: uscan returned an error: In debian/watch no matching files for watch line http://www.drive5.com/muscle/downloads.htm http://www.drive5.com/muscle/downloads.+?/muscle(.*)_src\.tar\.gz hide
new upstream picard-tools New version available: 2.17.10 hide
new upstream htsjdk New version available: 2.14.3 hide
new upstream cloud-init New version available: 18.1 hide
new upstream cluster3 New version available: 1.54 hide
new upstream snappy-java New version available: 1.1.7.1 hide
new upstream last-align New version available: 923 hide
uscan error kalign debian/watch: uscan returned an error: uscan returned an empty output hide
new upstream mummer New version available: 4.0.0~beta2 hide
uscan error amap-align debian/watch: uscan returned an error: uscan returned an empty output hide
uscan error fastlink debian/watch: uscan returned an error: uscan returned an empty output hide
new upstream mafft New version available: 7.313 hide
new upstream phyml New version available: 3.3.20180214 hide

Show all todos

Versions

source jessie stretch buster sid experimental vcs upstream mentors
altree 1.3.1-2
bpo: 1.3.1-4~bpo8+1  
1.3.1-4   1.3.1-5     1.3.1-5   1.3.1    
amap-align 2.2-4   2.2-6     2.2-7   error    
bedtools 2.21.0-1   2.26.0+dfsg-3   2.26.0+dfsg-5   2.27.1+dfsg-1     2.27.1+dfsg-1   2.27.1    
bibus 1.5.2-4   1.5.2-5     1.5.2-5   1.5.2    
biococoa 2.2.2-2   2.2.2-3     2.2.2-3   2.2.2    
bioperl 1.6.924-1   1.7.1-2   1.7.2-2     1.7.2-2   1.7.2    
bioperl-run 1.6.9-2   1.7.1-3   1.7.2-3     1.7.2-3   1.7.2    
bitops 1.0-6-1        
boxshade 3.3.1-8   3.3.1-10   3.3.1-11     3.3.1-12   3.3.1    
bwa 0.7.10-1
bpo: 0.7.15-2~bpo8+1  
0.7.15-2   0.7.17-1     0.7.17-1   0.7.17    
clean-crypto 1-1        
cloud-init 0.7.6~bzr976-2
bpo: 0.7.7~bzr1156-1~bpo8+1  
0.7.9-2   0.7.9-5     0.7.9-5   18.1    
clustalw 2.1+lgpl-4   2.1+lgpl-5     2.1+lgpl-5   2.1    
clustalw-mpi 0.15-3        
clustalx 2.1+lgpl-3   2.1+lgpl-5   2.1+lgpl-6     2.1+lgpl-6   2.1    
cluster3 1.52a-1   1.53-1     1.53-1   1.54    
cufflinks 2.2.1-1   2.2.1-3   2.2.1+dfsg.1-2     2.2.1+dfsg.1-2   2.2.1    
dhcpstarv   0.2.2-1     0.2.2-1   0.2.2    
dialign 2.2.1-7   2.2.1-8   2.2.1-9     2.2.1-10   2.2.1    
dialign-t 1.0.2-7   1.0.2-9   1.0.2-11     1.0.2-11   1.0.2    
embassy-domainatrix 0.1.650-1   0.1.660-1   0.1.660-2     0.1.660-2   0.1.660    
embassy-domalign 0.1.650-1   0.1.660-1   0.1.660-2     0.1.660-2   0.1.660    
embassy-domsearch 1:0.1.650-1   1:0.1.660-1   1:0.1.660-2     1:0.1.660-2   0.1.660    
embassy-phylip 3.69.650-2   3.69.660-1   3.69.660-2     3.69.660-2   3.69.660    
emboss 6.6.0+dfsg-1   6.6.0+dfsg-6     6.6.0+dfsg-6   6.6.0    
emboss-explorer 2.2.0-8   2.2.0-9     2.2.0-9   2.2.0    
epcr 2.3.12-1-2   2.3.12-1-4   2.3.12-1-5     2.3.12-1-6   0.No-Release    
euca2ools 3.1.0-1   3.3.1-1     3.3.1-2   3.4.1    
exonerate 2.2.0-6   2.4.0-2   2.4.0-3     2.4.0-3   2.4.0    
fastdnaml 1.2.2-10   1.2.2-11   1.2.2-12     1.2.2-13   0.No-Site    
fastlink 4.1P-fix95-3   4.1P-fix100+dfsg-1     4.1P-fix100+dfsg-1   error    
fastx-toolkit 0.0.14-1   0.0.14-3   0.0.14-5     0.0.14-5   0.0.14    
filo 1.1+2011123001.1   1.1.0-3        
gbrowse 2.54+dfsg-3   2.56+dfsg-2   2.56+dfsg-3     2.56+dfsg-3   2.56    
getdata 0.2-1   0.2-2     0.2-2   0.No-Track    
glam2 1064-3   1064-4     1064-5   0.No-Site    
htsjdk bpo: 2.1.1+dfsg.1-1~bpo8+1   2.8.1+dfsg-1   2.8.1+dfsg-2     2.12.0+dfsg-1   2.14.3    
htslib 1.1-1
bpo: 1.3.2-2~bpo8+1  
1.3.2-2   1.7-2     1.7-2   1.7    
kalign 1:2.03+20110620-2   1:2.03+20110620-3   1:2.03+20110620-4     1:2.03+20110620-4   error    
last-align 490-1
bpo: 830-1~bpo8+1  
830-1   921-1     921-1   923    
libace-perl 1.92-3   1.92-4   1.92-7     1.92-7   1.92    
libalgorithm-munkres-perl 0.08-2   0.08-3     0.08-4   0.08    
libbio-mage-perl 20030502.3-3   20030502.3-4     20030502.3-4   20030502.3    
libbio-mage-utils-perl 20030502.0-2   20030502.0-3     20030502.0-3   20030502.0    
libbio-primerdesigner-perl 0.07-3   0.07-5     0.07-5   0.07    
libbio-samtools-perl 1.39-1   1.43-1     1.42-1   1.43    
libbio-scf-perl 1.03-2   1.03-3     1.03-3   1.03    
libconvert-binary-c-perl 0.76-3   0.78-1     0.78-2   0.78    
libdata-stag-perl 0.13-1   0.14-2     0.14-2   0.14    
libgd-svg-perl 0.33-1     0.33-2   0.33    
libgo-perl 0.15-1   0.15-5   0.15-6     0.15-6   0.15    
libgtextutils 0.7-2   0.7-4     0.7-4   0.7    
libmath-random-perl 0.71-5   0.72-1     0.72-2   0.72    
libmqdb-perl 0.954-1     0.954-2   0.954    
libnet-amazon-s3-tools-perl 0.08-1   0.08-2     0.08-3   0.08    
libtfbs-perl 0.6.1+dfsg-1   0.7.0+dfsg-4   0.7.1-1     0.7.1-1   0.7.1    
mafft 7.205-1   7.307-1   7.310-1     7.310-2   7.313    
maq 0.7.1-5   0.7.1-7     0.7.1-8   0.7.1    
maqview 0.2.5-6   0.2.5-7   0.2.5-8     0.2.5-8   0.2.5    
melting 4.3.1+dfsg-1   4.3.1+dfsg-2   4.3.1+dfsg-3     4.3.1+dfsg-3   4.3.1    
mime-support 3.58   3.60     3.60      
mipe 1.1-4   1.1-5   1.1-6     1.1-6   1.1    
mira 4.0.2-1   4.9.6-2   4.9.6-3     4.9.6-3   4.9.6    
mocker 1.0-2     1.0-3   1.1    
mule 2.0.1-7        
mummer 3.23~dfsg-2   3.23+dfsg-2   3.23+dfsg-3     3.23+dfsg-3   4.0.0~beta2    
muscle 1:3.8.31-1   1:3.8.31+dfsg-2   1:3.8.31+dfsg-3     1:3.8.31+dfsg-3   error    
njplot 2.4-2   2.4-7     2.4-7   2.4    
odt2txt 0.4+git20140608-1   0.5-1     0.5-1   0.5    
paraclu 9-1     9-1   error    
patman   1.2.2+dfsg-4     1.2.2+dfsg-4   1.2.2    
perlprimer 1.1.21-2   1.2.3-1     1.2.3-2   1.1.21    
phyml 2:20120412-2
bpo: 3:3.2.0+dfsg-7~bpo8+1  
3:3.2.0+dfsg-7   3:3.3.20170530+dfsg-2     3:3.3.20170530+dfsg-3   3.3.20180214    
picard-tools 1.113-1
bpo: 2.1.1+dfsg-1~bpo8+1  
2.8.1+dfsg-1   2.8.1+dfsg-3     2.8.1+dfsg-3   2.17.10    
plink 1.07-3   1.07-7   1.07+dfsg-1     1.07+dfsg-1   1.07    
poa 2.0+20060928-3   2.0+20060928-4   2.0+20060928-6     2.0+20060928-6   2.0    
primer3 2.3.6-1   2.3.7-3   2.3.7-4   2.4.0-1     2.4.0-1   2.4.0    
probcons 1.12-9   1.12-11     1.12-12   1.12    
proda 1.0-8   1.0-10   1.0-11     1.0-11   1.0    
pv-grub-menu 1.3     1.3      
pvclust 1.3-0-1   2.0-0-1   2.0-0-2     2.0-0-2   2.0-0    
python-biopython 1.64+dfsg-5
bpo: 1.68+dfsg-3~bpo8+1  
1.68+dfsg-3   1.70+dfsg-4     1.70+dfsg-4   1.70    
python-pysam 0.7.7-1
bpo: 0.9.1.4+ds-1~bpo8+1  
0.10.0+ds-2   0.12.0.1+ds-4   0.14+ds-2     0.14+ds-2   0.14    
r-cran-epitools 1:0.5-7-1   1:0.5-10-1     1:0.5-10-1   0.5-10    
r-cran-genetics 1.3.8.1-1   1.3.8.1-2     1.3.8.1-2   1.3.8.1    
r-other-bio3d 1.1-5-1        
rnahybrid 2.1.1-2   2.1.2-1   2.1.2-4     2.1.2-4   0.No-Track    
sablecc 3.2-1   3.7-1     3.7-1   3.7    
samtools 0.1.19-1
bpo: 1.3.1-2~bpo8+1  
1.3.1-3   1.7-1     1.7-1   1.7    
samtools-legacy 0.1.19-2        
seaview 1:4.5.3.1-2
bpo: 1:4.6.1.2-2~bpo8+1  
1:4.6.1.2-2   1:4.6.4-1     1:4.6.4-1   4.6.4    
sigma-align 1.1.3-3   1.1.3-4   1.1.3-5     1.1.3-4   1.1.3    
snappy-java bpo: 1.1.2.6-1~bpo8+1   1.1.2.6-1   1.1.4-1     1.1.4-1   1.1.7.1    
snappy1.0.3-java 1.0.3-rc3~dfsg-4        
sra-sdk 2.3.5-2+dfsg-1
bpo: 2.8.1-2+dfsg-2~bpo8+1  
2.8.1-2+dfsg-2   2.8.2-3+dfsg-1   2.8.2-5+dfsg-1     2.8.2-5+dfsg-1   2.8.2-5    
srf 0.1+dfsg-4   0.1+dfsg-5     0.1+dfsg-5   0.1    
ssake 3.8.2-1   3.8.4-1   3.8.5-1   4.0-1     4.0-1   4.0    
staden-io-lib 1.13.7-1   1.14.8-2   1.14.9-4     1.14.9-4   1.14.9    
tabix 0.2.6-2        
transrate-tools   1.0.0-1     1.0.0-2   1.0.0    
tree-puzzle 5.2-7   5.2-8   5.2-10     5.2-9   5.2    
treeviewx 0.5.1+20100823-3   0.5.1+20100823-4   0.5.1+20100823-5     0.5.1+20100823-5   0.5.1    
umegaya 1.0     1.0      
velvet 1.2.10+dfsg1-1   1.2.10+dfsg1-3   1.2.10+dfsg1-4   1.2.10+dfsg1-5   1.2.10+dfsg    
wise 2.4.1-17   2.4.1-19   2.4.1-20     2.4.1-20   2.4.1    

Bugs, security issues and Quality Assurance Checks

source bugs lintian (un)reproducible piuparts ci security URLs
(duck)
all RC patch pending E W I P X O sid/amd64 jes str sid
altree 0 bugs graph       5 5 16              
amap-align 0 bugs graph       2 3 6 1   pass          
bedtools 2 bugs graph 2 80 6 4   fail          
bibus 3 bugs graph 1 5 4 stretch2buster-rcmd            
biococoa 1 bugs graph 4 3 2              
bioperl 0 bugs graph       17 8 9 1   pass          
bioperl-run 0 bugs graph       24 15 4 2 buster/arm64:depwait buster/armhf:depwait buster/i386:depwait   fail          
bitops 0 bugs graph                      
boxshade 0 bugs graph       3 1   pass          
bwa 0 bugs graph       5 8   pass          
clean-crypto 0 bugs graph                      
cloud-init 7 bugs graph 7 11 37 1 1              
clustalw 0 bugs graph       1 1 11 1   pass          
clustalw-mpi 0 bugs graph                      
clustalx 0 bugs graph       4 6 1              
cluster3 0 bugs graph       3 8                
cufflinks 0 bugs graph       2 3                
dhcpstarv 0 bugs graph       1 5 5              
dialign 0 bugs graph       1 5 1   pass         fail
dialign-t 0 bugs graph       1 1 4 1   pass          
embassy-domainatrix 0 bugs graph       2 5 1 7              
embassy-domalign 0 bugs graph       2 7 1 4              
embassy-domsearch 0 bugs graph       5 2 5 1              
embassy-phylip 0 bugs graph       48 5 1 40                
emboss 1 bugs graph 7 23 15 28 9 1 buster/amd64 buster/arm64 buster/armhf buster/i386   pass          
emboss-explorer 0 bugs graph       4 3 5 1              
epcr 0 bugs graph       4 8 4             fail
euca2ools 2 bugs graph 1 4 3 7              
exonerate 0 bugs graph       5 5 2   pass          
fastdnaml 1 bugs graph 1 2 7 1              
fastlink 0 bugs graph       5 13 5 5              
fastx-toolkit 0 bugs graph       5 4 6 22 buster/amd64 buster/arm64 buster/armhf buster/i386   pass          
filo 0 bugs graph                      
gbrowse 1 bugs graph 25 6 9 1 buster/amd64 buster/arm64 buster/armhf buster/i386 stretch2buster-rcmd fail         fail
getdata 0 bugs graph       1 5              
glam2 0 bugs graph       6 4 5             fail
htsjdk 1 bugs graph 5 5 buster/arm64:depwait buster/armhf:depwait buster/i386              
htslib 0 bugs graph       2 9 3 2 4 stretch2buster-rcmd pass   1 1    
kalign 0 bugs graph       1 3 1   pass          
last-align 0 bugs graph       3 4 11 7   pass          
libace-perl 0 bugs graph       5 2 6 6   pass          
libalgorithm-munkres-perl 0 bugs graph       3 1 5   pass          
libbio-mage-perl 0 bugs graph       133 3 2   pass          
libbio-mage-utils-perl 0 bugs graph       12 2 4              
libbio-primerdesigner-perl 0 bugs graph       3 2   pass          
libbio-samtools-perl 0 bugs graph       8 4 4 2   pass          
libbio-scf-perl 1 bugs graph 2   pass          
libconvert-binary-c-perl 0 bugs graph       2 3   pass          
libdata-stag-perl 0 bugs graph       1 2 2 stretch2buster-rcmd pass          
libgd-svg-perl 0 bugs graph       5 10 5   pass         fail
libgo-perl 0 bugs graph       1 10 2 stretch2buster-rcmd pass          
libgtextutils 0 bugs graph       1 3 7 1 3              
libmath-random-perl 0 bugs graph       1 4 3                
libmqdb-perl 0 bugs graph       7 8 3             fail
libnet-amazon-s3-tools-perl 1 bugs graph 2 1 1 1   pass          
libtfbs-perl 0 bugs graph       13 6 16   pass          
mafft 0 bugs graph       2 5 27 stretch2buster-rcmd pass          
maq 0 bugs graph       3 4 1   pass          
maqview 0 bugs graph       1 3 4              
melting 0 bugs graph       6 5 1              
mime-support 12 bugs graph 5 4 4              
mipe 1 bugs graph 1 4 stretch2buster-rcmd            
mira 0 bugs graph       2 2 7 1 buster/amd64 buster/arm64 buster/armhf buster/i386   pass          
mocker 0 bugs graph       4 5 4   pass          
mule 0 bugs graph                      
mummer 0 bugs graph       2 18 2 21 buster/amd64 buster/arm64 buster/armhf buster/i386   pass          
muscle 0 bugs graph       2 7 1 buster/armhf:FTBFS   pass          
njplot 0 bugs graph       7 7 4   pass          
odt2txt 4 bugs graph 1 1 4 4 1              
paraclu 0 bugs graph       4 4 3              
patman 0 bugs graph       2 1 2              
perlprimer 0 bugs graph       2 3              
phyml 0 bugs graph       3 14 6 3   pass          
picard-tools 1 bugs graph 2 14 1 buster/arm64:depwait buster/armhf:depwait stretch2buster-rcmd pass          
plink 0 bugs graph       2 5 1   pass          
poa 0 bugs graph       2 7 1   pass          
primer3 1 bugs graph 1 6 8 38 4   fail          
probcons 0 bugs graph       2 4 6 2   pass          
proda 0 bugs graph       2 2 7 1 buster/armhf:FTBFS   pass          
pv-grub-menu 2 bugs graph 1 4 2 oldstable222sid stretch2proposed stretch-rcmd stretch stretch2buster-rcmd jessie2proposed jessie-rcmd jessie jessie2Xstretch-rcmd jessie2stretch-rcmd jessie2Xstretch jessie2stretch oldstable22testing wheezy2bpo2jessie stable22sid stable2sid testing2sid sid-strict stretch2buster buster-rcmd buster sid-nodoc sid            
pvclust 0 bugs graph       1 3 4              
python-biopython 1 bugs graph 2 1 12 31 1 buster/amd64 buster/arm64 buster/armhf buster/i386   fail          
python-pysam 0 bugs graph       3 11 5 11 2 buster/amd64:FTBFS buster/arm64:FTBFS buster/armhf:FTBFS buster/i386:depwait stretch2buster-rcmd pass          
r-cran-epitools 0 bugs graph       3   pass          
r-cran-genetics 0 bugs graph       7   pass          
r-other-bio3d 0 bugs graph                      
rnahybrid 0 bugs graph       1 5 5   pass          
sablecc 0 bugs graph       1 1 4              
samtools 0 bugs graph       18 9 4 13 stretch2buster-rcmd pass          
samtools-legacy 0 bugs graph       1 23 6              
seaview 0 bugs graph       2 8 1              
sigma-align 0 bugs graph       2 3 1             fail
snappy-java 1 bugs graph 1 2 5 4              
snappy1.0.3-java 0 bugs graph                      
sra-sdk 1 bugs graph 39 69 3 buster/amd64 buster/arm64:depwait buster/armhf:depwait buster/i386:FTBFS              
srf 0 bugs graph       1 6 1              
ssake 0 bugs graph       2 3   pass          
staden-io-lib 0 bugs graph       30 8 8 1 12 stretch2buster-rcmd pass          
tabix 0 bugs graph                      
transrate-tools 0 bugs graph       1 5 4              
tree-puzzle 2 bugs graph 1 18 3 2              
treeviewx 1 bugs graph 1 2 6 1              
umegaya 1 bugs graph 1 3 6 4 39              
velvet 0 bugs graph       4 53 8 14 6   pass          
wise 0 bugs graph       3 39 10 12 stretch2buster-rcmd pass          

Derivatives

source Ubuntu Debian
links bugs patches artful (stable) bionic (devel) sid
bedtools LP     2.26.0+dfsg-3  2.26.0+dfsg-5
prop: 2.27.1+dfsg-1 
2.27.1+dfsg-1 
bibus LP 2 1 1.5.2-4  1.5.2-5 
biococoa LP     2.2.2-2  2.2.2-3build1  2.2.2-3 
bioperl-run LP     1.7.1-3  1.7.1-3
prop: 1.7.2-3 
1.7.2-3 
bwa LP 1   0.7.15-5  0.7.17-1 
cloud-init LP 83 3 17.1-18-gd4f70470-0ubuntu1
upd: 17.1-46-g7acc9e68-0ubuntu1~17.10.1
prop: 17.2-35-gf576b2a2-0ubuntu1~17.10.1 
17.2-34-g644048e3-0ubuntu1  0.7.9-5 
embassy-domalign LP 1   0.1.660-1  0.1.660-2 
embassy-phylip LP 1   3.69.660-1  3.69.660-2 
emboss LP 3   6.6.0+dfsg-6  6.6.0+dfsg-6build1  6.6.0+dfsg-6 
euca2ools LP 10   3.3.1-1 
gbrowse LP 1   2.56+dfsg-3  2.56+dfsg-3build1  2.56+dfsg-3 
htsjdk LP 1   2.8.1+dfsg-1  2.8.1+dfsg-2 
libbio-samtools-perl LP     1.43-1build2  1.43-1build3  1.43-1 
libbio-scf-perl LP     1.03-3build1  1.03-3build2  1.03-3 
libconvert-binary-c-perl LP     0.78-1build2  0.78-1 
libmath-random-perl LP     0.72-1build3  0.72-1 
mime-support LP 17   3.60ubuntu1  3.60ubuntu1  3.60 
mira LP     4.9.6-3  4.9.6-3build2  4.9.6-3 
odt2txt LP 1   0.5-1build1  0.5-1 
primer3 LP     2.3.7-4  2.3.7-4
prop: 2.4.0-1 
2.4.0-1 
sablecc LP 1   3.7-1 

Packages without bugs, patches or a different version in a derivative are not listed.

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