| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| gcc-14.patch | declare void functions implicitly typed int. This fixes the following error, now fatal, with gcc-14: . FCluster.c:223:1: error: return type defaults to ‘int’ [-Wimplicit-int] 223 | UpdateMinCacheForRow(struct t_Min* asMin,int i,float** aafDistMatrix) | ^~~~~~~~~~~~~~~~~~~~ FCluster.c:244:1: error: return type defaults to ‘int’ [-Wimplicit-int] 244 | UpdateMinCacheForMarkedRows(struct t_Min* asMin,float** aafDistMatrix,int nN) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ |
Étienne Mollier <emollier@emlwks999.eu> | no | debian | 2024-08-07 | |
| fix_sequence_of_function_definitions.patch | fix sequence of function definitions Fix the sequence of function definitions to make sure UpdateMinCacheForRow() is known before its first usage. . This package is orphaned upstream, hence the patch not being forwarded. |
Andreas Tille <tille@debian.org> | no | debian | 2024-04-11 | |
| fix_missing_header.patch | Add missing header file The package is orphaned upstream, hence not forwarded. | Andreas Tille <tille@debian.org> | no | debian | 2024-04-11 | |
| fix-path-for-data.patch | Description: The upstream software is built so as to run from the build environment and look for data in ../Data. In Debian the binaries belong in /usr/bin and the data belongs in /usr/share. With this patch the binaries will run from any directory. A better fix would be to allow setting of the Data directory via an environment variable or a variable passed to MAKE at build time. This could be contributed back to upstream. . The package is orphaned upstream, hence not forwarded. |
Tim Booth <tbooth@ceh.ac.uk> | no | 2011-04-28 | ||
| fix-segfault-on-non-fasta-input.patch | Some apps segfault when non-FASTA data is inputted, and this is flagged as a security concern. I suspect there are still ways to segfault this app, but at least this fixes an obvious crash. Also fixes https://code.google.com/p/ampliconnoise/issues/detail?id=10 . The package is orphaned upstream, hence not forwarded. |
Tim Booth | no | 2013-06-27 | ||
| hardening.patch | Propagate hardening options The package is orphaned upstream, hence the patch is not forwarded. | Andreas Tille <tille@debian.org> | no | 2024-08-07 | ||
| clang-ftbfs.patch | Fix FTBFS with clang instead of gcc The package is orphaned upstream, hence not forwarded. | Arthur Marble <arthur@info9.net> | no | debian | 2014-02-24 | |
| mayhem.patch | Fix Mayhem issues by making reading fasta files more robust The package is orphaned upstream, hence not forwarded. | Andreas Tille <tille@debian.org> | no | debian | 2015-12-18 |