| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| fix_classpath_in_build_xml.patch | Make sure package builds with Debian packages JARs | Andreas Tille <tille@debian.org> | not-needed | |||
| remove_appbundler.patch | Remove mac specific stuff breaking build on Linux when not providing appbundler-*.jar | Andreas Tille <tille@debian.org> | not-needed | 2015-09-28 | ||
| antlr-compatibility.patch | Fixes the compatibility with the version of ANTLR in Debian | Emmanuel Bourg <ebourg@apache.org> | not-needed | |||
| remove_mac_only_code.patch | Avoid Mac only code which is not needed and fails due missing support in latest libjam-java | Andreas Tille <tille@debian.org> | not-needed | debian | 2019-01-26 | |
| remove_jsign_from_build.patch | net.jsign is used for WIndows releases, removing it from build.xml | Pierre Gruet <pgtdebian@free.fr> | not-needed | 2020-09-15 | ||
| accents_in_source.patch | Removing accents on names in a Java annotation Those accents caused build failures as javac tried to encode US-ASCII but could not. |
Pierre Gruet <pgtdebian@free.fr> | not-needed | 2020-09-15 | ||
| remove_import_swing_security.patch | Remove import of unused org.fest.swing.security package The ExitException class form this package is not used, instead ExitException if defined in the file as an override of java.lang.SecurityException. |
Pierre Gruet <pgtdebian@free.fr> | yes | 2020-09-15 | ||
| adapt_source_to_Debian_jar_path.patch | Putting the paths of a Debian install in Beast main class | Pierre Gruet <pgtdebian@free.fr> | not-needed | 2020-09-27 | ||
| handling_minor_issues_in_tests.patch | Fixing minor issues in tests or deactivating them testBeautiSubTemplateIfElement, testBeautiSubTemplateCombined and testBeautiSubTemplateIfMultipleElement are deactivated as they fail due to minor issues related to extra whitespaces in a xml file. . testClassMap is deactivated as the file version.xml does not exist before beginning. . testFileLog is deactivated as logger.init() prints "Writing file test/beast.log" although logger.fileNameInput.get() is "beast.log" and thus makes the test fail. . testRPNXMLParser is deactivated as, at some point, the program tries to instantiate Parameter, which is an interface. . testNewickTargetTree : caring for the deletion of /tmp/target.tree and /tmp/source.trees if they already exist. . testAnnotatedConstructor2 : caring for the deletion of /tmp/XMLTest.xml if it already exists. |
Pierre Gruet <pgtdebian@free.fr> | yes | 2020-10-03 |