Debian Patches
Status for bwa-mem2/2.2.1-1
| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| 0001-Fix-typo.patch | Fix typo | teepean <tnatkinn@gmail.com> | not-needed | upstream, https://github.com/bwa-mem2/bwa-mem2/commit/a5df52284fff63266ff31310711e657a40479a4a | 2021-03-17 | |
| 0002-fixed-return-status-due-incorrect-input-files.patch | fixed return status due incorrect input files | Vasimuddin <wasim.mzr@gmail.com> | not-needed | upstream, https://github.com/bwa-mem2/bwa-mem2/commit/966cd1e0e7869c45ae7a93287612be6697406051 | 2021-06-30 | |
| 0003-fixed-smem-memory-rellocation-issue-issue167.patch | fixed smem memory rellocation issue (issue167) | Vasimuddin <wasim.mzr@gmail.com> | not-needed | upstream, https://github.com/bwa-mem2/bwa-mem2/commit/edc703f883e8aaed83067100d8e54e0e9e810ef5 | 2021-12-12 | |
| 0004-Update-to-reflect-2.2.1-release-and-small-typo.patch | Update to reflect 2.2.1 release and small typo - Add direct links to 2.2.1 release - The example bwa-mem2 run is for the d2 dataset not d3 so indicate that with output file - Add DOI and link to publication for easier citing |
Jason Stajich <jasonstajich.phd@gmail.com> | not-needed | upstream, https://github.com/bwa-mem2/bwa-mem2/commit/320f0c365a86e2576250f87399812c19710d21ad | 2022-06-06 | |
| 0005-GCC-11-now-defines-__rdtsc-so-definition-test-condit.patch | GCC 11 now defines __rdtsc so definition test conditional on GCC version | "Martin O. Pollard" <mp15@sanger.ac.uk> | not-needed | upstream, https://github.com/bwa-mem2/bwa-mem2/commit/d48e1dec3bc305124e0e2764a8824af29084dd66 | 2022-06-13 | |
| 0006-fixed-segfault-due-to-memory-shortage-in-smem.patch | fixed segfault due to memory shortage in smem | Vasimuddin <wasim.mzr@gmail.com> | not-needed | upstream, https://github.com/bwa-mem2/bwa-mem2/commit/7f3a4db2e5e419b0802902cd83ab120362db657b | 2023-12-18 | |
| 0007-Merge-pull-request-229-from-gh-jphan-fix_n_processed.patch | Merge pull request #229 from gh-jphan/fix_n_processed Fix threading reproducibility issue by moving n_processed update line from step 2 to step 1 |
Vasimuddin Md <wasim.mzr@gmail.com> | not-needed | upstream, https://github.com/bwa-mem2/bwa-mem2/commit/7aa5ff6c3330490e5629ab9b7327683d2dce02d6 | 2024-05-09 | |
| hardening | Enable proper flag appending so that Debian can harden the build. | "Michael R. Crusoe" <crusoe@debian.org> | yes | 2020-07-09 | ||
| simde | Enable building on non-x86 | "Michael R. Crusoe" <crusoe@debian.org> | yes | 2025-02-27 | ||
| 0010-newer-GCC-support.patch | newer GCC support | "Michael R. Crusoe" <crusoe@debian.org> | no | 2025-02-27 |
All known versions for source package 'bwa-mem2'
- 2.2.1-1 (sid, forky)