| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| cgview_path.patch | Make sure test will work and set correct path to cgview.jar | Andreas Tille <tille@debian.org> | no | 2018-09-05 | ||
| testscripts.patch | Fix some test scripts regarding paths and robustness regarding download (s/ftp:/http:/) | Andreas Tille <tille@debian.org> | no | 2018-09-05 | ||
| fix_cgview_path.patch | Fix path to cgview.jar in test script | Andreas Tille <tille@debian.org> | no | 2018-09-05 | ||
| conditionalize_blast_-Q_-D.patch | Address BLAST usage errors as of BLAST+ 2.10. Supply the legacy blastall command's -Q and -D flags only in BLAST variants that involve translating queries and subjects respectively. (tblastx notably translates both.) supplied $format_type value (7 or 9) results in the warning Warning: [tblastn] The parameter -num_descriptions is ignored for output formats > 4 . Use -max_target_seqs to control output Actually substituting -max_target_seqs would require bypassing the legacy blastall wrapper, which isn't entirely straightforward in this instance due to the need to convert a variable format string to modern options. (Also, this script technically only knows the path to blastall, though that shouldn't be a concern in practice on Debian.) |
Aaron M. Ucko <ucko@debian.org> | yes | 2020-10-19 |