Debian Patches
Status for cyvcf2/0.34.0-1
| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| i386.patch | I386 Skip test on i386 because the file ends up with a few NaN values due to exceeding ranges, hence skipping |
Nilesh Patra <npatra974@gmail.com> | no | 2021-01-26 | ||
| fix-haploid-genotype-phasing.patch | Fix phasing reported for haploid genotypes The phase of a genotype is read from the second allele slot of the sample, which is wrong for haploid (ploidy-1) records where that slot actually holds the next sample's first allele. Read the phase from the sample's own last allele instead. This matters since htslib >= 1.22 treats haploid genotypes as implicitly phased, so the wrong slot now carries a set phase bit where it used to be clear. |
Andreas Tille <tille@debian.org> | no | 2026-09-21 |