| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| do_not_handle_python_by_upstream_build_system.patch | Installation for Python files does not work that way and this is done manually in debian/rules | Andreas Tille <tille@debian.org> | no | 2015-11-19 | ||
| gubbins_exe_in_usr_lib.patch | gubbins executable prints that it is not intended for direct usage While default install procedure installs gubbins executable to /usr/bin it prints that it is intended to be called from run_gubbins. So it makes sense to rather install it to /usr/lib/gubbins instead of /usr/bin. |
Andreas Tille <tille@debian.org> | no | 2015-11-19 | ||
| iqtree2.patch | Adapt test to iqtree2 | Andreas Tille <tille@debian.org> | yes | debian | 2022-02-13 | |
| autoupdate_configure.ac.patch | autoupdate to avoid warnings from configure.ac | Andreas Tille <tille@debian.org> | not-needed | 2023-07-12 | ||
| python3-shebang.patch | fix unversioned Python shebang of a couple of scripts. | Étienne Mollier <emollier@debian.org> | not-needed | 2024-05-22 | ||
| remove-numba-temporarily.patch | disable numba in upstream code. This patch keeps gubbins running while numba is not available in testing. Ideally, numba should be simply recommended, and the code to proceed to numba JIT compilation should be capable of shifting gears to no-optimization in order to support situations where numba is not available. |
Étienne Mollier <emollier@debian.org> | not-needed | debian | 2024-05-22 |