| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| libxml2_2.12.0.patch | support compilation with libxml2 2.12.0 libxml2 2.12.0 now makes xmlGetLastError() return const pointer: https://gitlab.gnome.org/GNOME/libxml2/-/commit/45470611b047db78106dcb2fdbd4164163c15ab7 Fix variable type using xmlGetLastError() as such. |
Mamoru TASAKA <mtasaka@fedoraproject.org> | no | upstream,https://github.com/sbmlteam/libsbml/commit/a3e217851f18d3c5e8e2b0082fb98176738491e8 | 2023-11-30 | |
| perl-installdirs.patch | Install Perl modules in correct dir | gregor herrmann <gregoa@debian.org> | no | 2018-05-01 | ||
| hardening.patch | hardening . libsbml (5.11.0+dfsg-1sid1) UNRELEASED; urgency=medium . * update from upstream |
Ivo Maintz <ivo@maintz.de> | no | |||
| swig-3.x.patch | Build with SWIG 3.x | Logan Rosen <logan@ubuntu.com> | no | debian | 2015-11-19 | |
| mips-compile-with-O1.patch | package libsbml FTBFS on mipsel We have successfully built libsbml using -O1 optimization level. -O1 is used for mips/mipsel, for critical part of package. . With this patch we was able to build package on lemote loongson 3a. |
Jurica Stanojkovic <Jurica.Stanojkovic@imgtec.com> | no | debian | 2015-06-08 | |
| javadoc_java9.patch | Work around javadoc issue with Java 9 See https://lists.debian.org/debian-java/2018/03/msg00023.html Andreas Tille <tille@debian.org> |
Markus Koschany <apo@debian.org> | no | debian | 2018-03-18 | |
| javadoc.patch | Deal with issue in doclets /build/libsbml-5.16.0+dfsg/docs/src/SBMLDoclet.java:112: error: package com.sun.tools.doclets.standard is not visible import com.sun.tools.doclets.standard.Standard; ^ (package com.sun.tools.doclets.standard is declared in module jdk.javadoc, which does not export it) . This web page brought the idea for the patch: https://docs.oracle.com/javase/9/docs/api/com/sun/javadoc/class-use/LanguageVersion.html |
Andreas Tille <tille@debian.org> | no | 2018-05-14 | ||
| remove_SBMLDoclet.patch | Deal with issue in doclets by removing docs/src/SBMLDoclet.java | Andreas Tille <tille@debian.org> | no | debian | 2018-05-14 | |
| fix_build_issue.patch | Avoid error TypeError: '>=' not supported between instances of 'str' and 'int' | Andreas Tille <tille@debian.org> | no | 2019-01-15 | ||
| fix_python_interpreter.patch | examples/python/distrib/createStatisticsExample .py Quilt seems unable to deal with this - if users want to use this example they simply need to fix it manually. |
Andreas Tille <tille@debian.org> | no | 2020-01-26 | ||
| missing_header.patch | the FbcAssociation header has to be included in the matlab bindings, as they use the FbcAssociation class | Pierre Gruet <pgt@debian.org> | yes | 2022-11-26 | ||
| doxygen_mathjax_path.patch | Use Debian packaged mathjax.js | Andreas Tille <tille@debian.org> | not-needed | 2023-12-18 |