| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| optin_usage_report | this patch change strategy to optin ie user asks per config/env vars to send reports, else it is disabled by default. Not a bug by itself but default strategy update to send info over internet. |
Olivier Sallou <osallou@debian.org> | no | |||
| enable_clean_after_failed_compile | Enable clean | Tim Booth | no | |||
| hurd_fixes | fix portability issues that led to Hurd build failures * src/build-system/configure(.ac): - Reflect the Hurd's support for -Wl,rpath,... . * src/connect/ncbi_socket_cxx.cpp, src/connect/ext/ncbi_localnet.c: cope with missing PATH_MAX everywhere, not just under Windows. |
Aaron M. Ucko <ucko@debian.org> | no | 2020-09-19 | ||
| legacy_rename_rpsblast | rename binary as blast+ for package coherency. | Olivier Sallou <olivier.sallou@irisa.fr> | no | |||
| fix_lib_deps | ensure that all libraries link against all direct dependencies * src/**/Makefile.*.lib: set DLL_(D)LIB correctly. Break the dependency loop between libxblast and libxalgoblastdbindex by having the former provide only the C++ BLAST API, leaving the C core only in libblast. * src/build-system/library_relations.txt: Change xblast's relationship to blast from includes to needs, accordingly. * src/algo/blast/Makefile.blast_macros.mk: Add blast to BLAST_LIBS. * src/algo/blast/dbindex*/*/Makefile.*.app: Link against libxconnect rather than libconnect for consistency with libblast, which uses the former to keep the aforementioned cycle-breaking from causing inconsistency elsewhere. |
Aaron M. Ucko <ucko@debian.org> | no | 2016-12-05 | ||
| no_multiarch_rpath | avoid redundant rpath entries on multiarch systems * src/build-system/configure(.ac): when ensuring that executables will be able to find libstdc++, don't add rpath entries that files under /etc/ld.so.conf.d already specify, even if they don't resemble traditional single-architecture or biarch locations. |
Aaron M. Ucko <ucko@debian.org> | no | 2011-08-28 | ||
| use_pie_for_apps | build executables with -fPIE, not -fPIC * -fPIC is only useful for shared libraries; substitute -fPIE (along with -pie at link time) when building executables. |
Aaron M. Ucko <ucko@debian.org> | no | 2012-05-10 | ||
| skip_services_unit_test | test require internet connection | Tim Booth | no | |||
| fix_configure | Debian build is not done in configure directory, need to update way to get relative configure.orig script | Olivier Sallou <osallou@debian.org> | no | |||
| support_x32 | Support x32 Avoid picking up wrong inline assembly. |
Aaron M. Ucko <ucko@debian.org> | no | 2021-12-01 | ||
| suppress_tls_version_checks | suppress gnu TLS and mbed TLS version checks Prevent bailing when the exact compile-time and runtime GNU TLS versions differ; trust dpkg to disallow combinations that are actually incompatible. Likewise for mbed TLS. |
Aaron M. Ucko <ucko@debian.org> | no | 2021-12-01 | ||
| optionally_keep_sequence | Hang on to sequence data even if -parse_deflines recognized a non-local ID, on the condition that the environment variable BLAST_ALWAYS_KEEP_SEQUENCE (or configuration parameter [BLAST] always_keep_sequence) is set to a "true" value (English-only, case-insensitive true, t, yes, y, or 1). |
Aaron M. Ucko <ucko@debian.org> | no | 2016-12-14 | ||
| fix_unit_tests | unit_test need blast lib to compile | Olivier Sallou <osallou@debian.org> | not-needed | |||
| system_mbedtls_only | Omit convenience mbed TLS copy | Aaron M. Ucko <amu@ucko.debian.net> | no | 2021-12-01 | ||
| reprobuild | make the build more reproducible | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| spelling | Spelling fixes | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| support_gcc10 | Support GCC 10+. * ncbifile.cpp (s_GetFileSystemInfo): Formally cast st.f_type to avoid narrowing errors for cases with the high bit set when that field is a 32-bit signed integer (as on i386). =================================================================== |
Aaron M. Ucko <ucko@debian.org> | no | 2020-09-06 | ||
| run_perl_directly | Bypass env in Perl script shebangs. | Aaron M. Ucko <ucko@debian.org> | no | 2021-12-01 | ||
| tune_lmdb_defaults | no |