| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| sphinx-ext | yes | |||||
| local-mathjax.patch | Use mathjax package | Stuart Prescott <stuart@debian.org> | not-needed | |||
| numpy-fix.patch | Adapt with newer numpy and nibabel | Nilesh Patra <nilesh@debian.org> | no | debian | 2022-12-21 | |
| numpy1.24.patch | Fix formula summing for change in Numpy sum | Matthew Brett | no | debian | 2023-01-14 | |
| nibabel5.0.0.patch | port py3k calls to nibabel 5.0.0 The nibabel.py3k module doesn't exist anymore. numpy.compat.py3k is fetched directly instead. A number of Nifti1Image class instantiations also need adjustment, since masks of int64 or uint64 are not tolerated implicitly anymore. |
tienne Mollier <emollier@debian.org> | yes | debian | 2023-01-31 | |
| nibabel5.1.0.patch | fix deprecation errors in reverse dependencies. Calls to nibabel.onetime.setattr_on_read are deprecated since nibabel 3.2, and raise an ExpiredDeprecationError since nibabel 5.0, causing test failures in reverse dependencies such as nipype. This patch migrates the code to the documented replacement nibabel.onetime.auto_attr. |
tienne Mollier <emollier@debian.org> | no | debian | 2023-08-17 | |
| standard-gifty-support.patch | explicitly cast data format to gifti. The newer GiftiDataArray now works only with float32 (and various integer types) but receives float64 matrices from NumPy, thus it is necessary to indicate the datatype to the operator. . This patch contributes to resolve nipy test failures at package build time. |
tienne Mollier <emollier@debian.org> | no | debian | 2023-08-17 | |
| remove-imagefileerror.patch | remove check for ImageFileError. This error class completely disappeared from the library it is imported from. Reading the comment around the code, it seems to be in use fo legacy support of said library, so shouldn't be a problem in Debian context. . This patch contributes to resolve partially nipy test failures at build time. |
tienne Mollier <emollier@debian.org> | no | debian | 2023-08-17 |