Patch for stricter use of CXXFLAGS. CXXFLAGS is a "user variable" that can be overridden at compilation time. The Debian build system overrides CXXFLAGS, breaking ProDA's build system that relies on it to pass -DVERSION="\"1.00\"" to the compiler. This patch replaces OTHERFLAGS by CPPFLAGS. This makes sure that -DVERSION="\"1.00\"" is passed to the compiler for proda as well as all the .o files (build by implicit rule), even if CXXFLAGS is overridden. More information on user variables can be found at http://www.gnu.org/software/libtool/manual/automake/User-Variables.html#User-Variables and http://www.gnu.org/prep/standards/standards.html#Command-Variables
Patch for compiling with g++-4.3. GCC 4.3 has a stricter requirements for the declaration of includes. Without this patch, ProDA would not build with g++4.3.