| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| use_debian_packaged_hdf5.patch | It seems there is no need to package BioConductor rhdf5 and we wan go with r-cran-hdf5 - at least the test suite passes with this strategy | Andreas Tille <tille@debian.org> | no | 2016-08-22 | ||
| fixme_disable_test_for_the_moment.patch | This test strangely fails with: ── Error (test-accessors.R:25:1): (code run outside of `test_that()`) ────────── Error: Both attempts to read input file: /usr/lib/R/site-library/biomformat/extdata/min_sparse_otu_table_hdf5.biom either as JSON (BIOM-v1) or HDF5 (BIOM-v2). Check file path, file name, file itself, then try again. Backtrace: █ 1. ├─base::suppressWarnings(read_biom(min_sparse_hdf5)) test-accessors.R:25:0 2. │ └─base::withCallingHandlers(...) 3. └─biomformat::read_biom(min_sparse_hdf5) [ FAIL 1 | WARN 4 | SKIP 0 | PASS 26 ] . To keep on with the BioConductor transition the failure is ignored for the moment but needs to be investigated |
Andreas Tille <tille@debian.org> | no | 2021-09-06 |