| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| hack_to_use_H5private.h.patch | r-bioc-rhdf5 is using H5private.h While this is totally broken to use this private header file it is provided here as a copy of the source code of libhdf5-dev 1.10.4+repack-10 which is provided as a code copy |
Andreas Tille <tille@debian.org> | no | 2019-04-25 | ||
| use_debian_packaged_libhdf5.patch | Use Debian packaged libhdf5 | Andreas Tille <tille@debian.org> | no | 2019-04-25 | ||
| fix-hdf5deref.patch | Default H5Rdereference to H5Rdereference2 if it has been defined | Nilesh Patra <nilesh@debian.org> | no | 2022-05-14 | ||
| skip_failing_tests.patch | Skip three tests due to ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_external_filters.R:74:5'): BLOSC filter works when reading ─── H5Dget_storage_size(did) is not strictly less than 4 * 2000. Difference: 0 ── Error ('test_h5read.R:357:5'): Failing to read BLOSC ──────────────────────── Not all required filters available. Missing filters: blosc ▆ 1. ├─testthat::expect_silent(h5read(blosc_file, "dset")) at test_h5read.R:357:4 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─rhdf5::h5read(blosc_file, "dset") 10. └─rhdf5:::h5readDataset(...) 11. └─base::tryCatch(...) 12. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 13. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 14. └─value[[3L]](cond) ── Error ('test_h5read.R:357:5'): Failing to read BLOSC ──────────────────────── ▆ 1. ├─testthat::expect_silent(h5read(blosc_file, "dset")) at test_h5read.R:357:4 2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise) 3. │ ├─testthat (local) .capture(...) 4. │ │ ├─withr::with_output_sink(...) 5. │ │ │ └─base::force(code) 6. │ │ ├─base::withCallingHandlers(...) 7. │ │ └─base::withVisible(code) 8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 9. └─rhdf5::h5read(blosc_file, "dset") 10. └─rhdf5::H5Dclose(h5dataset) 11. └─rhdf5:::h5checktype(h5dataset, "dataset") [ FAIL 3 | WARN 0 | SKIP 2 | PASS 1058 ] |
Andreas Tille <tille@debian.org> | no | 2023-07-22 |