Debian Patches

Status for scoary/1.6.16-5

Patch Description Author Forwarded Bugs Origin Last update
python3.11.patch fix invalid argument in open mode past python3.11. Since python3, the universal newline mode 'U' has no effects.
Since python3.11, that mode is obsolete and its use raises:

Command: scoary.py -g scoary/exampledata/Gene_presence_absence.csv -t scoary/exa
mpledata/Tetracycline_resistance.csv -o Test1 --no-time
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/scoary.py", line 25, in <module>
methods.main()
File "/<<PKGBUILDDIR>>/scoary/methods.py", line 184, in main
with open(args.genes, "rU") as genes, \
^^^^^^^^^^^^^^^^^^^^^^
ValueError: invalid mode: 'rU'
Étienne Mollier <emollier@debian.org> no 2022-12-07

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