Debian Patches

Status for sepp/4.5.5+dfsg-1

Patch Description Author Forwarded Bugs Origin Last update
setup.patch Do not check existence of third party tools since these are removed. We are using Debian packaged tools Andreas Tille <tille@debian.org> not-needed 2020-05-24
use_debian_packaged_guppy_from_pplacer.patch Use Debian packaged guppy and hmm* An if statement is added because copy_tool_to_lib is also called for the jar
that is generated before the Python part of the build.		 Andreas Tille <tille@debian.org> not-needed 2020-08-19
change_java_version_for_ant.patch More recent version of Java suppresses some warnings Pierre Gruet <pgt@debian.org> not-needed https://lists.debian.org/debian-med/2020/08/msg00104.html 2021-09-25
java_build.patch Adapting the build.xml file of ant to Debian policy There are no embedded jars to include.
The classpath thus has to be changed to include Debian-packaged jars.
The .java files should not be included in the target jars.		 Pierre Gruet <pgt@debian.org> not-needed 2021-09-25
configuration_files_in_etc_and_per_user.patch using configuration files that are in /etc or in ~/.sepp Pierre Gruet <pgt@debian.org> not-needed 2020-10-08
deactivating_log_test.patch deactivating minor test relative to log verbosity level Pierre Gruet <pgt@debian.org> yes 2020-10-05
using_python3_interpreter.patch Marking the Python interpreter as python3 This is to conform to Debian Python policy. Pierre Gruet <pgt@debian.org> yes https://www.debian.org/doc/packaging-manuals/python-policy/programs.html#interpreter-directive 2021-09-25
hmmbuild_path_for_testUPP.patch use Debian path of hmmbuild in testUPP Pierre Gruet <pgt@debian.org> not-needed 2021-09-26

All known versions for source package 'sepp'

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