| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| 0001-Use-the-inbuild-sphinx.ext.napoleon.patch | Use the inbuild sphinx.ext.napoleon Removes the dependency on sphinxcontrib.napoleon, which is now part of sphinx proper, as sphinx.ext.napoleon. |
Kevin Murray <spam@kdmurray.id.au> | no | 2015-09-13 | ||
| local_javascript.patch | Use local Javascript etc for privacy Some of the badge images legally could be replaced with local copies, but this would appear to be a live status when it isn't (or a per-version status that is easy to forget to update), so use text links instead |
Kevin Murray <spam@kdmurray.id.au>, Andreas Tille <tille@debian.org>, Rebecca N. Palmer <rebecca_palmer@zoho.com> | no | |||
| 0003-Compat-fix.patch | Compat fix | Kevin Murray <kdmfoss@gmail.com> | no | 2016-12-02 | ||
| 0006-restore-bin.patch | Version 3.9.1 is lacking snakemake executable - using the binary that results from build process as quilt patch at the former location | Andreas Tille <tille@debian.org> | no | 2017-01-09 | ||
| 0008-remove_sphinx.ext.patch | Remove sphinxext which spoils doc generation | Andreas Tille <tille@debian.org> | no | 2017-12-06 | ||
| 0009-skip-test-without-google-cloud-sdk.patch | Skip tests that depend on google-cloud-sdk if not installed This is not currently in Debian - see RFP #759578. |
chrysn <chrysn@fsfe.org>, Rebecca N. Palmer <rebecca_palmer@zoho.com> | not-needed | |||
| python3.patch | Use Python 3 in subprocess calls TODO - are any of the ones in snakemake/script.py:execute_script a problem? |
Michael R. Crusoe <michael.crusoe@gmail.com>, Rebecca N. Palmer <rebecca_palmer@zoho.com> | no | |||
| workaround_sphinx_issue.patch | Exclude common.py:lazy_property from documentation Needed as Sphinx 2 can't process it This is obviously not an ideal fix, but it's an internal class with little documentation to begin with: https://snakemake.readthedocs.io/en/stable/api_reference/internal/snakemake.html#snakemake.common.lazy_property Also exclude Flask.request due to https://github.com/sphinx-doc/sphinx/issues/7516 |
Rebecca N. Palmer <rebecca_palmer@zoho.com> | yes | debian | ||
| remove_ccbysa_snippets.patch | Remove code from Stack Overflow Stack Overflow content is CC-BY-SA licensed, which this package is not supposed to be. These snippets may be too small to be copyrightable, but removing them to be safe. |
Rebecca N. Palmer <rebecca_palmer@zoho.com> | invalid |