| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| find_ngs-sdk.patch | ngs-sdk header files are in /usr/include | Andreas Tille <tille@debian.org> | no | 2016-06-06 | ||
| find_ncbi-vdb.patch | Make sure libncbi-vdb will be found | Andreas Tille <tille@debian.org> | no | 2016-06-06 | ||
| find_configure_libs.patch | Help configure finding Debian packaged libraries | Andreas Tille <tille@debian.org> | no | |||
| 10_portability.patch | Drop redundant -m32/-m64 option to enable build on all Debian architectures | Andreas Tille <tille@debian.org> | no | |||
| hardening.patch | Propagate Debian hardening options into build system This is most probably not the most elegant way, but when simply setting CFLAGS in debian/rules they simply override the CFLAGS setting inside the sequence of Makefiles which leads to a loss of DEFINES and INCDIRS which are needed to build properly |
Andreas Tille <tille@debian.org> | no | |||
| find_hdf5_serial.patch | Debian has several flavours of hdf5 - use serial here | Andreas Tille <tille@debian.org> | no | 2016-06-06 | ||
| link_debian_packaged_libz.patch | Since libncbi-vdb is dynamically linked against zlib and libbz2 these need to be explicitly specified here | Andreas Tille <tille@debian.org> | no | |||
| link_debian_packaged_lmagic.patch | link against Debian packages libmagic | Andreas Tille <tille@debian.org> | no | |||
| dont_use_static_lib.patch | Don't use static library | Andreas Tille <tille@debian.org> | no | 2016-06-06 | ||
| set_explicit_path_to_schemata.patch | In Debian */*.vschema is installed to /usr/lib/ncbi-vdb/ | Andreas Tille <tille@debian.org> | no | 2016-06-06 | ||
| absolute_vschema_path_in_test.patch | We need to set absolute paths also in the test (test fails anyway for different reasons and is excluded later) | Andreas Tille <tille@debian.org> | no | 2016-06-06 | ||
| ignore_failing_tests_for_the_moment.patch | Exclude failing tests | Andreas Tille <tille@debian.org> | no | 2016-06-06 | ||
| do_not_link_statically.patch | Do not link statically | Andreas Tille <tille@debian.org> | no | 2016-06-06 | ||
| link_debian_packaged_libmbed.patch | link against Debian packaged libmbedtls-dev | Andreas Tille <tille@debian.org> | no | debian | ||
| seek_dynamic_libs.patch | Seek for dynamic lib rather than static if dynamic lib exists | Andreas Tille <tille@debian.org> | no | |||
| certs.kfg.patch | Point to correct location of kfg config files in libncbi-vdb2 package | Andreas Tille <tille@debian.org> | no | |||
| drop_tests.patch | Drop tests that require network access | Aaron M. Ucko <ucko@debian.org> | no | 2020-05-21 | ||
| ignore_failing_test_for_the_moment_FIXME.patch | It needs to be investigated why this test is failing with: align-cache: . /build/sra-sdk-2.9.0+dfsg/test/align-cache# /build/sra-sdk-2.9.0+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/align-cache -t 10 --min-cache-count 1 CSRA_file CSRA_file.cache 2018-03-24T08:35:56 align-cache.2.9.0 err: VSchemaParseFile (align/mate-cache.vschema) failed with code 0x31c50918 (834996504) [RC(libs/vdb/schema.c:858:VSchemaOpenFile rcFS,rcDirectory,rcOpening,rcPath,rcNotFound)] . . copycat: . /build/sra-sdk-2.9.0+dfsg/test/copycat# make Starting copycat tests... 2018-03-24T08:48:48 copycat.2.9.0 int: libs/kfs/ffmagic.c:943:KMagicFileFormatMake: loadable library unexpected while loading file format within file format detection module - failed to create file format |
Andreas Tille <tille@debian.org> | no | 2018-03-24 | ||
| python3 | Upgrade from Python2 to Python 3 | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| use_exposed_headers.patch | no | |||||
| use_unversioned_tools.patch | =================================================================== | no | ||||
| skip_broken_loaders.patch | no |