| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| include_debians_zlib.patch | Use the zlib distributed by Debian, not the one in third-party/zlib-1.2.3/. | Charles Plessy <plessy@debian.org> | no | |||
| shuffleSequences_fasta.patch | Scripts need to specify interpreter in the first line | Andreas Tille <tille@debian.org> | invalid | |||
| fix-perl-path.patch | s?/usr/local/perl?/usr/perl? | Andreas Tille <tille@debian.org> | no | |||
| 0001-isCreateBinary-should-not-be-inline.patch | [PATCH 1/4] isCreateBinary() should not be inline This function is used from several .c files; with inline here, compilation with clang was broken. |
John Marshall <jm18@sanger.ac.uk> | no | 2013-10-17 | ||
| hardening.patch | Propagate hardening options | Andreas Tille <tille@debian.org> | no | 2024-08-07 | ||
| spelling.patch | Fix spelling | Andreas Tille <tille@debian.org> | no | 2018-07-05 | ||
| 2to3.patch | Use 2to3 to port to Python3 | Andreas Tille <tille@debian.org> | no | debian | 2019-12-02 | |
| gcc-14.patch | fix incompatible pointer types. Incompatible pointer types are now fatal with gcc 14 by default. This change fixes the following issues: . src/readSet.c:641:21: error: assignment to ‘gzFile’ {aka ‘struct gzFile_s *’} from incompatible pointer type ‘AutoFile *’ [-Wincompatible-pointer-types] 641 | file.gzFile = file.autoFile = NULL; | ^ src/readSet.c: In function ‘readFastXPair’: src/readSet.c:680:22: error: assignment to ‘gzFile’ {aka ‘struct gzFile_s *’} from incompatible pointer type ‘AutoFile *’ [-Wincompatible-pointer-types] 680 | file1.gzFile = file1.autoFile = NULL; | ^ src/readSet.c:681:22: error: assignment to ‘gzFile’ {aka ‘struct gzFile_s *’} from incompatible pointer type ‘AutoFile *’ [-Wincompatible-pointer-types] 681 | file2.gzFile = file2.autoFile = NULL; | ^ |
Étienne Mollier <emollier@debian.org> | no | debian | 2024-08-07 |