| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| use_debian_packaged_libs_for_extension.patch | use Debian packages dependencies for extension build | Sascha Steinbiss <satta@debian.org> | no | |||
| use_bwa_compatible_fermi-lite.patch | Adapt to fermi-lite which does not conflict with bwa An issue on fermi-lite upstream tracker https://github.com/lh3/fermi-lite/issues/5 suggests to take over a patch for the Debian package which would enable making it co-usable with libbwa-dev (which is needed in libseqlib). This patch adapts ariba to the potential change in fermi-lite. |
Andreas Tille <tille@debian.org> | no | 2017-02-04 | ||
| add-testdata.patch | include testdata in package | Sascha Steinbiss <satta@debian.org> | no | 2019-09-09 | ||
| disable-tests-with-internet-access.patch | disable tests that need Internet access | Sascha Steinbiss <satta@debian.org> | no | 2019-09-09 | ||
| support-pymummer-0.11.patch | adapt test cases for new PyMUMmer version pymummer 0.11 uses a different internal format which is incompatible with the one assumed by Ariba. Note that ariba hard-requires an earlier version than the one in Debian. However, since Debian has updated pymummer now, we need to catch up even though upstream does not. |
Sascha Steinbiss <satta@debian.org> | no | 2020-06-30 | ||
| run-debian-spades-wrapper.patch | run Debian SPAdes wrapper Debian's /usr/bin/spades.py is not a Python script, but a wrapper around a common executable only provided for compatibility reasons. Ariba is trying to execute it explicitly as a Python script. This patch just calls the executable without forcing it through the Python interpreter. |
Sascha Steinbiss <satta@debian.org> | no | 2020-06-30 |