Debian Patches
Status for biojava5-live/5.4.0+dfsg-5
| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| fix_itext_class_updates.patch | one of the class from iText moved to another package. Upstream code needs to refer to this new package and depends on newer release if iText5 |
Olivier Sallou <osallou@debian.org> | not-needed | |||
| use_simple_json.patch | json.org library is not "free", use simple_json library and update according to API . [ Gilles Filippini <pini@debian.org> ] Patche updated to migrate away from deprecated json-simple 1.x classes See json-simple 2.0.0 changelog: > * Deprecated JSONParse and JSONValue in favor of Jsoner. > * Deprecated JSONStreamAware and JSONAware in favor of Jsonable. > * Deprecated JSONObject in favor of JsonObject. > * Deprecated JSONArray in favor of JsonArray. . This patch now uses the new json-simple Json* classes. It is compatible with both 2.x and 3.x json-simple releases, with a few ajustments regarding backward incompatible changes in json-simple 3.x: - The package name, changed to com.github.cliftonlabs.json_simple This change is handled using place-holders @JSON_SIMPLE_PACKAGE@ which are substituted at build time by debian/rules. . With this trick the package is compatible with json-simple 2.x and 3.x. =================================================================== |
Olivier Sallou <osallou@debian.org> | no | |||
| fix_import.patch | some classes are not imported | Olivier Sallou | not-needed | |||
| faketest.patch | empty test creates failure at compilate, add fake test to allow compilation and global test success | Olivier Sallou <osallou@debian.org> | not-needed | |||
| fix_ascii_characters_mapping.patch | unmappable character for encoding ASCII | Olivier Sallou <osallou@debian.org> | yes | upstream | ||
| skip_network_related_tests.patch | debian builds expects to run with no network Pierre Gruet <pgt@debian.org> | Olivier Sallou <osallou@debian.org> | not-needed | |||
| remove_openchart_use.patch | biojava makes use of a limited set of forester As openchart is not available in Debian, remove openchart related calls to make forester compilation OK in biojava context |
Olivier Sallou <osallou@debian.org> | not-needed | |||
| ignore_fake_tests.patch | some class tests do not have tests inside, but junit tries to execute them. Simple skip those classes with no real test to avoid errors during build. | Olivier Sallou <osallou@debian.org> | not-needed | |||
| poms.patch | Including forester and jcolorbrewer into the Maven build | Pierre Gruet <pgt@debian.org> | not-needed | 2021-10-19 | ||
| wrong_version_in_dependency.patch | many version numbers in one sub-pom file are wrong | Pierre Gruet <pgt@debian.org> | yes | 2021-10-13 | ||
| jmol_path_in_pom.patch | currently jmol does not ship Maven artifacts | Pierre Gruet <pgt@debian.org> | not-needed | 2021-10-19 | ||
| adapting_to_ciftools-java3.patch | Some packages and classes have changed in ciftools-java 3.0.0 | Pierre Gruet <pgt@debian.org> | yes | 2021-10-19 | ||
| adapting_to_jgrapht1.5.1.patch | Some packages have changed in jgrapht 1.5.1 | Pierre Gruet <pgt@debian.org> | yes | 2021-10-19 | ||
| remove_tests_needing_junitx.patch | omitting tests needing junitx.framework.FileAssert as junitx is not packaged in Debian | Pierre Gruet <pgt@debian.org> | not-needed | 2021-10-19 | ||
| fix_ambiguous_method_call.patch | Add explicit cast to fix ambiguous method call error Taken from upstream to match expected method call https://github.com/biojava/biojava/blob/master/biojava-structure/src/main/java/org/biojava/nbio/structure/chem/ZipChemCompProvider.java |
no |
All known versions for source package 'biojava5-live'
- 5.4.0+dfsg-5 (bookworm)