Debian Patches
Status for bioperl/1.7.8-4
| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| 0001-fix-error-popping-up-with-latest-perl-releases-a80e8a655a953301f71538f9088a613eb63d5a73.patch | fix error popping up with latest perl releases | Chris Fields <cjfields@illinois.edu> | yes | upstream | https://github.com/bioperl/bioperl-live/commit/a80e8a655a953301f71538f9088a613eb63d5a73 | 2025-03-31 |
| 0001-fix-error-popping-up-with-latest-perl-releases-01ba1a675c80e7f8b77e05be9055d1208f246083.patch | fix error popping up with latest perl releases | Chris Fields <cjfields@illinois.edu> | yes | upstream | https://github.com/bioperl/bioperl-live/commit/01ba1a675c80e7f8b77e05be9055d1208f246083 | 2025-03-31 |
| perl-5.42-precedence.patch | Fix warnings with Perl 5.42 Possible precedence problem between ! and numeric eq (==) at /build/bioperl-1.7.8/blib/lib/Bio/AlignIO/Handler/GenericAlignHandler.pm line 98. Possible precedence problem between ! and numeric eq (==) at /build/bioperl-1.7.8/blib/lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm line 379. |
gregor herrmann <gregoa@debian.org> | yes | debian upstream | vendor | 2025-09-03 |
| fix-missing-Test-modules.patch | l/B/R/Test.pm: manually export Test::Most submodules. Since recent versions of Test::Most around April or May 2026, the Bio::Root::Test module is not reexporting properly submodules of Test::Most anymore. This patch fixes, or works around, the issue by exporting the missing modules manually. |
Étienne Mollier <emollier@debian.org> | no | debian | 2026-06-21 |