Debian Patches

Status for bowtie2/2.5.3-1

Patch Description Author Forwarded Bugs Origin Last update
drop-not-needed-js-from-manual.patch Remove link to external js lib, not needed as used for ie browsers Alex Mestiashvili <amestia@rsh2.donotuse.de> not-needed
wrong-interpreter-path.patch Use path to interpreter instead of /usr/bin/env Alex Mestiashvili <amestia@rsh2.donotuse.de> not-needed
hardening.patch Patch injects hardening C(PP,XX) FLAGS and LDFLAGS Sascha Steinbiss <satta@debian.org> Alexandre Mestiashvili <alex@biotec.tu-dresden.de> no Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> 2018-01-02
reproducible.patch make build reproducible This patch removes the embedding of build specific values like
hostname, time, etc. from the binary. It also ensures a stable
sorting order for all wildcard expansions in the Makefile.
Sascha Steinbiss <sascha@steinbiss.name> not-needed
skip_test_requiring_non-free_libmath-random-perl.patch Math::Random is in package libmath-random-perl which is unfortunately in non-free thus we can not use it for testing while building
this package. Thus the occurrences of references and the surrounding code
is removed here.
Andreas Tille <tille@debian.org> not-needed 2017-01-09
do-not-rebuild-during-test.patch do not rebuild with default settings during test The test suite builds the debug versions of the executables with default
flags, while is needs to be built with the flags in d/rules.
Sascha Steinbiss <satta@debian.org> not-needed
simde Enable SIMDE everywhere Michael R. Crusoe <crusoe@debian.org> not-needed
correct_64bit_test Handle -m64 and -msse2 flags better Michael R. Crusoe <crusoe@debian.org> not-needed
no_sanity save resources by not making/testing the -fsantize variants Michael R. Crusoe <crusoe@debian.org> not-needed
use-source-date-epoch-in-Makefile.patch Patch Makefile to set date for BUILD_TIME using SOURCE_DATE_EPOCH.
https://reproducible-builds.org/docs/source-date-epoch/
Vagrant Cascadian <vagrant@reproducible-builds.org> no debian 2020-12-14

All known versions for source package 'bowtie2'

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