Debian Patches

Status for cnvkit/0.9.12-1

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Patch	Description	Author	Forwarded	Bugs	Origin	Last update
0004-Remove-np.asfarray-np.float_-usage-to-support-numpy-.patch	Remove np.asfarray,np.float_ usage to support numpy-2.x deprecation	Suhas Rao <surao@ucsd.edu>	no		upstream, https://github.com/etal/cnvkit/commit/5cb6aeaf40ea5572063cf9914c456c307b7ddf7a	2024-12-20
0005-Another-numpy-2.x-fix.patch	Another numpy 2.x fix	"Michael R. Crusoe" <crusoe@debian.org>	yes			2025-02-06
controldir	do not create dir if it exists command tries to create an output dir during tests, even if it already exists, raising an error. Skip creation if already present	Olivier Sallou <osallou@debian.org>	no	debian		2019-03-27
ignore-warnings-in-tests.patch	Ignore warnings during pytest Debian packages keep moving. It is very impractical to have this setting.	Nilesh Patra <nilesh@debian.org>	not-needed			2025-02-06
python3compat.patch	enable building with Python3	Steffen Moeller <moeller@debian.org>	not-needed			2018-06-15

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