Debian Patches

Status for fastqc/0.11.9+dfsg-6

Patch Description Author Forwarded Bugs Origin Last update
htsjdk-api.patch use correct SamReader API Sascha Steinbiss <satta@debian.org> no
build_xml.patch Use Debian packaged JARs Andreas Tille <tille@debian.org> no 2015-12-04
fastqc.patch Ensure proper CLASSPATH according to location of Debian JARs
===================================================================
Steffen Moeller <moeller@debian.org> no
fix-help-call.patch The original way to open Help text ends up in an exception Setting the explicit file name as well as avoiding the call to
ClassLoader.getSystemResource
helps fixing this. Specifically the later is important, see
https://lists.debian.org/debian-med/2012/11/msg00073.html
Andreas Tille <tille@debian.org> no
set_configuration_path.patch use config in Debian etc dirs instead of embedding data in jar Olivier Sallou <osallou@debian.org> no
adapt_to_htslib.patch Path to samtools changed when switching from libsam-java to libhtsjdk-java Andreas Tille <tille@debian.org> no debian 2016-01-14
java-9.patch Set Java 9 as build target No idea whether this has some influence finally but trying to get rid
of this warning
[javac] Using javac -source 1.5 is no longer supported, switching to 1.7
[javac] Using javac -target 1.5 is no longer supported, switching to 1.7
is intended by this patch.
Andreas Tille <tille@debian.org> no 2018-04-27

All known versions for source package 'fastqc'

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