Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
---|---|---|---|---|---|---|
htsjdk-api.patch | use correct SamReader API | Sascha Steinbiss <satta@debian.org> | no | |||
build_xml.patch | Use Debian packaged JARs | Andreas Tille <tille@debian.org> | no | 2015-12-04 | ||
fastqc.patch | Ensure proper CLASSPATH according to location of Debian JARs =================================================================== |
Steffen Moeller <moeller@debian.org> | no | |||
fix-help-call.patch | The original way to open Help text ends up in an exception Setting the explicit file name as well as avoiding the call to ClassLoader.getSystemResource helps fixing this. Specifically the later is important, see https://lists.debian.org/debian-med/2012/11/msg00073.html |
Andreas Tille <tille@debian.org> | no | |||
set_configuration_path.patch | use config in Debian etc dirs instead of embedding data in jar | Olivier Sallou <osallou@debian.org> | no | |||
adapt_to_htslib.patch | Path to samtools changed when switching from libsam-java to libhtsjdk-java | Andreas Tille <tille@debian.org> | no | debian | 2016-01-14 | |
java-9.patch | Set Java 9 as build target No idea whether this has some influence finally but trying to get rid of this warning [javac] Using javac -source 1.5 is no longer supported, switching to 1.7 [javac] Using javac -target 1.5 is no longer supported, switching to 1.7 is intended by this patch. |
Andreas Tille <tille@debian.org> | no | 2018-04-27 |