| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| manual-image-conversion.patch | Replace ImageMagick with GraphicsMagick for build Current security policies in ImageMagick disable reading from PDFs, which is used in parts of the manual build. There's no stock CMake module (yet) to substitute for FindImageMagick.cmake, so fill in the required variables manually. |
Nicholas Breen | no | vendor | 2021-05-09 | |
| disable-gmxtimingtests.patch | Disable GmxTimingTests on mips64el GmxTimingTests segfaults within GTest on this architecture, regardless of optimization level. Disable until resolved elsewhere. |
Nicholas Breen | not-needed | 2022-02-25 | ||
| python3-collections-iterable.patch | Update python3 collections.Iterable call Python has replaced collections.Iterable with collections.abc. This updates the module import. |
Nicholas Breen | no | vendor | 2022-03-29 | |
| muparser-older-version.patch | Temporarily downgrade muParser version requirement to 2.3.3 muParser 2.3.4 is normally required, but 2.3.3 is the latest version in the archive at this time, and has only minor changes. Temporarily downgrade the version requirement until 2.3.4 is available. |
Nicholas Breen | not-needed | 2022-12-24 | ||
| readme.patch | Edit README to explain that this is not an official upstream build =================================================================== |
Nicholas Breen <nbreen@debian.org> | not-needed | vendor | ||
| copyright-file.patch | Install only a single copyright file Avoid duplication of COPYING and debian/copyright. A symlink is provided between the two. |
Nicholas Breen | not-needed | vendor | 2015-09-26 | |
| disable-cpuinfotest.patch | Disable CpuInfoTest.SupportLevel test This test is still a hard failure on less common architectures instead of a warning. Disable on those archs, as it should not fail the build. =================================================================== |
Nicholas Breen | yes | upstream | 2021-08-20 | |
| mdrun-test-timeout.patch | Extend timeout for mdrun tests Slower architectures, especially those without FPUs, may timeout on the mdrun tests - extending the timeout modestly allows them to pass. |
not-needed | vendor | 2018-10-28 | ||
| local-mathjax.patch | Use local copy of mathjax See https://lintian.debian.org/tags/privacy-breach-uses-embedded-file.html | not-needed | vendor | 2020-10-22 | ||
| mpi-tests-localhost.patch | Run MPI tests explicitly on localhost instead of hostname In the default configuration, MPICH tests will fail in a network-restricted environment where gethostbyname() does not return a valid address. As a workaround, this passes an explicit "-host localhost" to mpirun for the test suite only. =================================================================== |
Nicholas Breen <nbreen@debian.org> | no | 2022-11-20 |