Debian Patches

Status for hisat2/2.2.1-5

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Patch	Description	Author	Forwarded	Bugs
compilerflags	remove restrictive compiler flags	Sascha Steinbiss <satta@debian.org>	no	debian
fix-freebsd	Identify freebsd as a UNIX-like OS Match "gnukfreebsd" or "freebsd", when assigning $os_is_nix. Fixes build on FreeBSD.	Steven Chamberlain <stevenc@debian.org>	no	debian
fix-manual	Update manual path	Michael R. Crusoe <michael.crusoe@gmail.com>	no
hardening	Enable the passing of extra compilation flags, for hardening	Michael R. Crusoe <crusoe@debian.org>	yes
no_imp	Add Python3.12 support by removing use of the "imp" module Workaround is from https://docs.python.org/3.12/whatsnew/3.12.html#imp	Michael R. Crusoe <crusoe@debian.org>	yes
python3	2to3	Michael R. Crusoe <michael.crusoe@gmail.com>	no
reproducibile	Make build reproducible	Michael R. Crusoe <crusoe@debian.org>	yes
riscv5	Fix compilation on riscv5	Michael R. Crusoe <crusoe@debian.org>	no
simde	use the simde header library for greater compatibility	Michael R. Crusoe <crusoe@debian.org>	yes

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