| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| gradle_dependencies.patch | Adapting gradle build files to Debian environment Coordinates of Debian libraries are indicated. Also omitting all the modules stuff. |
Pierre Gruet <pgt@debian.org> | not-needed | 2021-08-12 | ||
| skip_tests_network.patch | ignoring build-time tests that require network access Also excluding all test classes extending AbstractHeadlessTest, as this class systematically looks for data on the Internet. |
Pierre Gruet <pgt@debian.org> | not-needed | 2021-12-21 | ||
| using_home_made_icons.patch | using free icons to replace the non-free ones | Pierre Gruet <pgt@debian.org> | not-needed | 2021-08-23 | ||
| old_gradle_name.patch | in Debian-packaged gradle, archiveFileName does not exist, using archiveName instead. | Pierre Gruet <pgt@debian.org> | not-needed | 2021-12-20 | ||
| jide_dependency.patch | jide dependency has been omitted from build.gradle by upstream because it is not in Maven Central anymore. We provide Debian coordinated instead. |
Pierre Gruet <pgt@debian.org> | not-needed | 2021-12-21 | ||
| omit_aws_stuff.patch | patching to build without AWS support Because the Amazon SDK is not packaged, we get rid of the classes that need it. We also cannot use JWTParser, which has a non DFSG-free license. |
Pierre Gruet <pgt@debian.org> | not-needed | 2021-12-21 | ||
| omit_spark_in_tests.patch | omitting Spark in the tests, as the needed libraries are not packaged in Debian. | Pierre Gruet <pgt@debian.org> | not-needed | 2021-12-21 | ||
| dont_parse_glat_output_in_tests.patch | ignoring tests that cannot run anymore, as we have removed files they used from the source tarball. Yet the tests were passing when the files were present. |
Pierre Gruet <pgt@debian.org> | not-needed | 2021-12-23 | ||
| wrong_override.patch | the @Override annotation is wrong because the Debian-packaged htsjdk is (at the moment) older than the one upstream relies on. | Pierre Gruet <pgt@debian.org> | not-needed | 2022-08-29 |