| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| build_gradle.patch | removing parts of build.gradle that are useless for a Debian build Also "destinationDirectory" is "destinationDir" in the jar task for gradle 4, and "archiveFileName" is "archiveName". |
Pierre Gruet <pgt@debian.org> | not-needed | 2022-05-19 | ||
| newer-mime4j-api.diff | Patch to use the latest version of Apache Mime4J | Emmanuel Bourg <ebourg@apache.org> | invalid | |||
| change_package_jfree.patch | change the package for org.jfree, which is not the correct one | Pierre Gruet <pgt@debian.org> | invalid | 2020-11-12 | ||
| get_rid_of_quaqua.patch | get rid of Quaqua look and feel, only licensed for Mac | Pierre Gruet <pgt@debian.org> | not-needed | 2020-11-14 | ||
| using_right_json_simple_package.patch | JSONObject was wrongly invoked It was called with a wrong package name, "simple" being forgotten. Moreover it is called on an AlignmentPojo object, I added the getAppSettings method in the call to get a HashMap<String, Object>. |
Pierre Gruet <pgt@debian.org> | invalid | 2020-11-15 | ||
| deactivate_getdown.patch | Not using getdown inside Jalview | Pierre Gruet <pgt@debian.org> | not-needed | 2020-11-16 | ||
| deactivate_classgraph.patch | avoid using classgraph, not needed to find the Debian jar | Pierre Gruet <pgt@debian.org> | not-needed | 2020-11-16 | ||
| deactivate_google_analytics.patch | Turn off Google analytics call, relies on non-packaged software | Pierre Gruet <pgt@debian.org> | not-needed | 2020-11-25 | ||
| selecting_tests_in_build_gradle.patch | removing tests that use the network, the GUI, unpackaged classes or non-existing files | Pierre Gruet <pgt@debian.org> | not-needed | 2023-11-29 | ||
| write_build_properties.patch | modifying the .build_properties file to account for Debian repackaging Also ensuring build reproductibility as timestamps are used. | Pierre Gruet <pgt@debian.org> | not-needed | 2021-07-28 | ||
| no_applet.patch | omitting to build JalviewLite (because it needs applets, that are not supported anymore from openjdk-17) and the classes that need it. | Pierre Gruet <pgt@debian.org> | invalid | debian | 2022-05-22 | |
| timestamp_from_changelog.patch | putting the timestamp of the latest debian/changelog entry instead of the one of compile time, in order to enhance build reproducibility | Pierre Gruet <pgt@debian.org> | not-needed | 2023-10-08 | ||
| groovy_syntax.patch | changing a package name to comply with Debian-packaged groovy | Pierre Gruet <pgt@debian.org> | not-needed | 2023-11-30 | ||
| deactivate_flatlaf.patch | classes from com.formdev.flatlab are not packaged in Debian | Pierre Gruet <pgt@debian.org> | not-needed | 2022-07-12 | ||
| unneeded_checks_when_launching.patch | disabling Java version checks, which cause trouble with our home-made build_properties file. | Pierre Gruet <pgt@debian.org> | not-needed | 2024-10-04 | ||
| waiting_launcher.patch | wiaint a bit for the launcher to start instead of failing at startup. This seems to be problematic only with the Debian packaging. | Pierre Gruet <pgt@debian.org> | not-needed | 2024-10-05 |