Debian Patches
Status for libbio-db-hts-perl/3.02-1
| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| fix_vcf_gt_test.patch | Update GT values expected by t/05vcf.t for htslib >= 1.22 htslib >= 1.22 fixed the encoding of the first allele of a phased genotype (the phasing bit of the first allele is now set correctly for VCF < 4.4 input and BCF files). The t/05vcf.t test hard-coded the old, incorrect GT values, so it failed with the latest htslib. This patch updates the expected GT values to match the new, spec conformant encoding. |
Andreas Tille <tille@debian.org> | no | 2026-09-21 | ||
| remove_rpath.patch | Remove DT_RUNPATH injection from Build.PL Debian builds against the system htslib in the standard library directory, so the -Wl,-rpath linker flag injected by upstream Build.PL points to a default library search path and triggers the lintian error custom-library-search-path. The RUNPATH is not needed in Debian. |
Andreas Tille <tille@debian.org> | no | 2026-09-21 |