Debian Patches

Status for ncbi-vdb/2.10.9+dfsg-2

Patch Description Author Forwarded Bugs Origin Last update
debug_configure.patch Force debugging output (--with-debug in d/rules is ignored by the build system) Andreas Tille <tille@debian.org> no 2016-07-12
find_hdf5_serial.patch use hdf5 serial May be there is a more elegant way to use hdf5 rather than patching the source
but I did not found it. Any hints are welcome.
Andreas Tille <tille@debian.org> no 2016-07-12
find_ngs-sdk.patch Enable finding ngs-sdk Andreas Tille <tille@debian.org> no 2016-07-12
skip_failing_test.patch Skip some tests that are failing in pbuilder. FIXME: There are more tests to skip but I have given up for the moment. Andreas Tille <tille@debian.org> no 2016-07-12
fix_install_target.patch Install target tries to install to /usr/lib64 which is broken on one hand and on the other hand I have not found a proper method to stop this
by less invasive means

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Andreas Tille <tille@debian.org> no 2016-07-12
use_debian_packaged_zlib.patch External copy of bz2 and zlib are removed - exclude these from build system as well. Andreas Tille <tille@debian.org> no 2016-07-12
spelling.patch Fix some spelling issues
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Andreas Tille <tille@debian.org> no 2016-07-12
remove_-m64_flag.patch Enable build on x32 by removing explicit -m32/-m64
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Andreas Tille <tille@debian.org> no debian 2016-08-31
add_-msse2.patch Add -msse2 to libs/search
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Andreas Tille <tille@debian.org> no debian 2016-08-31
use_debian_packaged_libmbedx.patch Somehow Build system expects a copy of libmbedx509.a which is in package libmbedtls-dev - just drop it from list of dependencies Andreas Tille <tille@debian.org> no 2016-11-04
mbedtls_ssl_init.patch Name change of function probably a consequence of using Debian packaged libmbedx Andreas Tille <tille@debian.org> no 2017-10-19
i386-uint64_msbit.patch add missing implementation of uint64_msbit for i386 Without this definition, we get a "successful" library build with undefined
symbols on i386. We can use the same implementation of this function as on
x86_64.

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Steve Langasek <steve.langasek@ubuntu.com> no debian
fix_path_mbedtls.patch Use Debian packaged mbedtls Steffen Moeller no 2020-02-07
redefine_CALL_MBEDTLS.patch There is another really tricky way to reference private mbedtls code copy which is fixed here Andreas Tille no 2020-03-04
fix_2.10.9_refseq_race.patch Fix a new race in asynchronous RefSeq loading code. Merge upstream (https://github.com/ncbi/ncbi-vdb) commits 06152a5,
cf92dca, and b342af2.
Kenneth Durbrow <durbrowk@ncbi.nlm.nih.gov> no 2021-01-18

All known versions for source package 'ncbi-vdb'

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