Debian Patches

Status for obitools/1.2.13+dfsg-5

Patch Description Author Forwarded Bugs Origin Last update
fix_path_interpreter use Debian Python Olivier Sallou <> no
use_debian_libs installer uses pip and virtualenv for install, this patch removes this specific install to install in Debian dirs
and use Debian libs
Olivier Sallou <> no
2to3.patch Use 2to3 to port to Python3 Unfortunately this does not work and the build fails with

/usr/lib/python3/dist-packages/Cython/Compiler/ FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/obitools-1.2.13+dfsg/src/obitools/options/_bioseqfilter.pyx
tree = Parsing.p_module(s, pxd, full_module_name)

Error compiling Cython file:
Andreas Tille <> no debian 2019-12-02
port_python3.patch fix to port to python3, upstream not maintained nor porting to py3. Olivier Sallou <> no
deocde-bytes-to-str.patch The readline function is somehow returning bytes instead of str, and so just decode to get string if readline returns bytes Nilesh Patra <> no debian 2022-10-24

All known versions for source package 'obitools'