| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| python-dist-packages.patch | On Debian Python packages are stored in 'dist-packages', not 'site-packages'. | Andrius Merkys <merkys@debian.org> | not-needed | |||
| fix-quotes-in-ENV.patch | CMake puts all strings having, for example, '~' in quotes, what breaks execution in Bash. | Andrius Merkys <merkys@debian.org> | no | |||
| skip-network-tests.patch | Skip tests requiring network access. | Andrius Merkys <merkys@debian.org> | no | |||
| ost-compare-structures.patch | Adding missing Python shebang. | Andrius Merkys <merkys@debian.org> | no | |||
| ost_config.patch | Adjusting paths for Debian installation. | Andrius Merkys <merkys@debian.org> | no | |||
| skip-dssp-tests.patch | openstructure is now incompatible with dssp >= 4, thus the tests fail if dssp is installed. This patch ignores the failing tests until the upstream adapts the code, or removes it altogether. |
Andrius Merkys <merkys@debian.org> | not-needed | |||
| 86c621b68f23f98fc30ed230be222ce4dd9432cd.patch | [PATCH] bugfix: avoid Eigen assertion in FindMembrane with cmake flag -DOPTIMIZE=0 Eigen does not like to compute "Thin" U and V matrices in JacobiSVD when matrix size is fixed at compile time. This triggers an assertion (optimized away with -DOPTIMIZE=1). Since we're talking of a quadratic matrix here, "Thin" and "Full" make no difference. |
Gabriel Studer <gabriel.studer@unibas.ch> | no | 2022-04-28 | ||
| b2798f24c37cb2ff0f46b929a4d41b4f3ce54a68.patch | [PATCH] Only add interactions with non-zero force constant in TopologyCreator Avoids triggering errors with more strict parameter checks introduced in OpenMM 7.4 |
Gabriel Studer <gabriel.studer@unibas.ch> | no | 2022-05-02 |