Debian Patches

Status for pymatgen/2022.11.7+dfsg1-11

Patch Description Author Forwarded Bugs Origin Last update
skip_failing_WulffShapeTest.patch =================================================================== no
docs_no_local_python.patch =================================================================== no
test_lammps_regex_path.patch =================================================================== no
docs_mathjax_local.patch =================================================================== no
numpy_1.24.patch =================================================================== no
test_piezo_4538090.patch [PATCH] Remove an inadvertent additional 0.0
This now failed tests due to numpy change and deprecation (see https://numpy.org/neps/nep-0034-infer-dtype-is-object.html), it seems like the `vasp_matrix` was mistakenly initialized with an additional 0.0. Tagging @dongsenfo who added this line in case I have misinterpreted.
Matthew Horton <mkhorton@users.noreply.github.com> no 2022-12-19
test_piezo_sensitivity_99b5cd7.patch [PATCH] fix PiezoSensitivityTest.test_get_BEC_operations() and test_get_FCM_operations()

def test_get_BEC_operations(self):
bec = BornEffectiveCharge(self.piezo_struc, self.BEC, self.pointops)
bec.get_BEC_operations()
> assert np.all(self.BEC_operations == bec.BEC_operations)
E assert False
E + where False = <function all at 0x7f9770be21f0>(array([[0, 0,... dtype=object) == [[0, 0, [Rot:...0. 0.]]], ...]
E + where <function all at 0x7f9770be21f0> = np.all
E Full diff:
E + array([[0, 0, list([Rot:
E + [[1. 0. 0.]
E + [0. 1. 0.]
E + [0. 0. 1.]]
E + tau
E + [0. 0. 0.], Rot:

also fix unknown mypy implicit_optional (only no_implicit_optional known)
Janosh Riebesell <janosh.riebesell@gmail.com> no 2023-01-05
openbabel_OBAlign.patch =================================================================== no
test_lammps_sorted.patch =================================================================== no
skip_nonfree_testfile.patch =================================================================== no
fix_phonon_bandstructures_7ba41e0.patch [PATCH] maybe fix PhonopyParserTest.test_get_ph_bs()
> self.nac_frequencies = np.array(naf)
E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 2 dimensions. The detected shape was (3, 2) + inhomogeneous part.

/home/runner/work/pymatgen/pymatgen/pymatgen/phonon/bandstructure.py:419: ValueError
Janosh Riebesell <janosh.riebesell@gmail.com> no 2023-01-04
stress_fp_approx_2839.patch =================================================================== no
no_mp_api.patch =================================================================== no

All known versions for source package 'pymatgen'

Links