| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| 03_povray.patch | Adjust povray options | Michael Banck <mbanck@debian.org> | not-needed | |||
| 22_fix_pymol_import.patch | Fix importing of pymol by setting PYMOL_PATH explicitly | Michael Banck <mbanck@debian.org> | not-needed | debian | ||
| 27_fix_pymol_path_in_setup.patch | Michael Banck <mbanck@debian.org> | no | ||||
| 28_no_data_install_in_python_path.patch | Michael Banck <mbanck@debian.org> | no | 2013-03-26 | |||
| 31_fix_format-security.patch | Fix "error: format not a string literal and no format arguments [-Werror=format-security]" (#759860) | Michael Banck <mbanck@debian.org> | invalid | |||
| 32_fix_spelling_lintian_warnings.patch | fix spelling lintian warnings | Tatiana Malygina <merlettaia@gmail.com> | no | 2016-07-18 | ||
| 33_fix_relative_paths_in_example_scripts.patch | fix relative paths in example scripts Some example scripts are intended to be used from directory they are located at. However, some of them use files located in different directory, which is given by relative path (e.g., "../../test/dat/pept.pdb") or path based on $PYMOL_PATH variable value. At the same time these scripts write output (if any present) to current directory. . These fixes enable users to call example scripts from different directories where they have write access. $PYMOL_PATH location addressed in examples path is incorrect, because in Debian package it points to different location. This script also solves this problem where it is possible. =================================================================== |
Tatiana Malygina <merlettaia@gmail.com> | no | 2016-08-14 | ||
| 34_fix_examples_add_fetch_instead_of_load.patch | use fetch instead of load in pymol scripts when necessary In example scripts, which require .pdb files not shipped with upstream source, use fetch instead of load, to download required Protein Data Bank structures. . See more on pymol's `fetch` command here: http://www.pymolwiki.org/index.php/Fetch |
Tatiana Malygina <merlettaia@gmail.com> | no | 2016-08-16 | ||
| 40_mstop_movies.patch | Modify examples so that they do not run forever When invoked in script mode (-c) pymol up until v2 used to exit; newer versions will loop the aninamtion forever. This patch puts an explicit stop at the end of each script where there is an animation being generated to make it stop playing. . While this potentially makes the examples less useful to run from the command line themselves without editing, it at least fixes the tests. |
Stuart Prescott <stuart@debian.org> | no | upstream |