Debian Patches

Status for python-anndata/0.13.4-2

Patch Description Author Forwarded Bugs Origin Last update
xdist-sort.patch test: sort parametrized set values for pytest-xdist (#2599) Joshua Gould <joshua-gould@users.noreply.github.com> not-needed upstream, https://github.com/scverse/anndata/commit/71dd36173496e6fdff3c29c84c5369737fa8d6a1 2026-08-12
suppress-names-are-not-unique-UserWarnings-in-tests.patch Suppress "names are not unique" UserWarnings in tests The concat tests in tests/lazy/test_concat.py intentionally concatenate
the same object twice, which triggers the UserWarning "Observation
(or Variable) names are not unique. To make them unique…" on every call
(~830 occurrences per test run). These warnings are expected behavior,
do not indicate any defect, and merely clutter the dh_auto_test log.
.
Add the corresponding ignore entry to the filterwarnings list in
[tool.pytest] of pyproject.toml. The regex pattern is taken verbatim from
the existing filterwarnings_when_strict list, so the two lists stay
consistent; the entry only takes effect in the regular (non-strict) test
run, which previously showed the warning.
.
The filter string also matches the per-test marker already used upstream
in tests/test_readwrite.py:833. No test asserts this warning via
pytest.warns, so silencing it globally carries no risk of introducing
DID NOT WARN failures.
Karsten Schöke <karsten.schoeke@geobasis-bb.de> not-needed 2026-10-03

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