Debian Patches
Status for python-bcbio-gff/0.7.1-2
| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| python-syntax-warning.patch | fix SyntaxWarning. This change treats the regex passed to the compiler as a raw string. This resolve the following warning: . /usr/lib/python3/dist-packages/BCBio/GFF/GFFParser.py:71: SyntaxWarning: invalid escape sequence '\w' gff3_kw_pat = re.compile("\w+=") |
Étienne Mollier <emollier@debian.org> | yes | debian | 2024-11-05 | |
| distutils-deprecation.patch | migrate away from distutils. Following [PEP 632], the distutils module is deprecated. In bcbio.gff, this module is still in use for it's logging facility, so a contemporary approach would be to use the "logging" module instead of distutils. logging.warning behaves essentially the same way as distutils.log.warn; there was also a logging.warn function but it is deprecated in favor of warning, thus this patch does not attempt to do something smart with things allowed by the import semantics. . [PEP 632]: https://peps.python.org/pep-0632/ |
Étienne Mollier <emollier@debian.org> | yes | 2024-11-05 |