Debian Patches

Status for python-biopython/1.87+dfsg-3

Patch Description Author Forwarded Bugs Origin Last update
remove_mathml-qname.patch Remove non DFSG free DTD Andreas Tille <tille@debian.org> yes debian 2014-04-30
privacy_breach.patch Do not use privacy-breach-logo Andreas Tille <tille@debian.org> not-needed 2015-05-12
privacy_breach_ie9.patch fix privacy breach with html5shiv
Actually the script called is commented out, except when reading the page with
Internet Explorer 9. This patch makes sure the script is not called at all,
even if it is very unlikely that HTML document installed in Debian will ever
be read with this browser.		 Étienne Mollier <etienne.mollier@mailoo.org> not-needed 2020-09-11
fix-type-cast-i386.patch fix test failure on 32-bit platforms. This fixes the following symptom while running the test suite of
Biopython on 32-bit processors:
.
File "/builds/med-team/python-biopython/debian/output/source_dir/.pybuild/cpython3_3.12/build/Bio/PDB/binary_cif.py", line 85, in _run_length_decoder
decoded_data = np.repeat(data[::2].astype(dtype), data[1::2])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 466, in repeat
return _wrapfunc(a, 'repeat', repeats, axis=axis)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 68, in _wrapfunc
return _wrapit(obj, method, *args, **kwds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/numpy/core/fromnumeric.py", line 45, in _wrapit
result = getattr(asarray(obj), method)(*args, **kwds)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TypeError: Cannot cast array data from dtype('uint32') to dtype('int32') according to the rule 'safe'		 Étienne Mollier <emollier@debian.org> no 2024-09-16
Fix-Endian-issue-with-binary-CIF.patch Fix Endian issue with binary CIFFix _bcif_helper.integer_unpack() to accept PEP 3118 buffer format strings
with optional endianness prefixes.
This fixes test failures on ppc64 where the buffer format
is reported as "<H" instead of "H".		 Karsten Schöke <karsten.schoeke@geobasis-bb.de> yes 2026-07-01

All known versions for source package 'python-biopython'

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