Debian Patches

Status for python-pbcore/2.6.0+dfsg-1

Patch Description Author Forwarded Bugs Origin Last update
doc-theme.patch Use default Sphinx theme for documentation The upstream's original theme includes their corporate
logo. To be safe, this patch ignores it and configures
the documentation builder to use the default theme.		 Afif Elghraoui <afif@ghraoui.name> no 2015-06-21
exclude_test_missing_data.patch Skip tests needing pbtestdata The PacBioTestData package is not available in Debian. Skip the tests
that require it instead of letting test collection fail.

diff --git a/pytest.ini b/pytest.ini
index 9d827fc..dbd44fa 100644		 Andreas Tille <tille@debian.org> no 2026-10-20
seek-curdir-for-xml.patch Try looking for mapping.xml in the current directory helps when package is not installed for generating docs etc Nilesh Patra <nilesh@debian.org> no 2021-12-23
no-intersphinx.patch remove intersphinx Andreas Tille <tille@debian.org> no debian 2024-12-16
remove-pkg-resources.patch Remove usages of pkg_resources pkg_resources are no longer available in Python 3.12 due to setuptools
removal from the default installation. This patch replaces the usages of
pkg_resources with importlib.resources.		 Vladimir Petko <vladimir.petko@canonical.com> yes debian upstream 2025-01-15
numpy-2.4.patch Fix compatibility with numpy 2.4 numpy 2.4 refuses int() on arrays that are not zero-dimensional and
removed the long-deprecated np.in1d alias. Extract the single element
explicitly and use np.isin instead.

diff --git a/pbcore/io/align/PacBioBamIndex.py b/pbcore/io/align/PacBioBamIndex.py
index 92e7dab..1b39a98 100644		 Andreas Tille <tille@debian.org> no debian 2026-10-20

All known versions for source package 'python-pbcore'

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