Debian Patches
Status for python-pybedtools/0.12.1-2
| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| spelling | Spelling typos fix | Michae R. Crusoe <michael.crusoe@gmail.com> | no | |||
| define_filenotfounderror_python2.patch | Define FileNotFoundError as OSError for python 2 | Liubov Chuprikova <chuprikovalv@gmail.com> | no | 2018-07-13 | ||
| add_missing_shebang.patch | Add missing shebang lines | Andreas Tille <tille@debian.org> | no | 2020-05-13 | ||
| yaml_safe_load.patch | Use yaml.safe_load instead of yaml.load which is deprecated Modify to use full_load where needed | Nilesh Patra <nilesh@debian.org>, Lance Lin <lq27267@gmail.com> | no | debian | 2023-10-27 | |
| doc-build-no-special-path | pybuild puts the extensions in a different location | Michael R. Crusoe <crusoe@debian.org> | not-needed | |||
| skip-tests-in-autopkgtest-context.patch | workaround autopkgtest failures. This patch skips a couple of tests in autopkgtest context, as otherwise, they attempt to write into the read-only system directory holding the dataset, which fails with: . E PermissionError: [Errno 13] Could not open output: Permission denied: '/usr/lib/python3/dist-packages/pybedtools/test/data/a.bed.gz' . Further errors ensue. A proper approache might be to fetch the data set from some place else or adjust the test suite to output intermediate data in a suitable directory. |
Étienne Mollier <emollier@debian.org> | not-needed | debian | 2026-10-17 | |
| fix-privacy-breaches.patch | fix privacy breaches. This patch removes a couple of links to on-line images from the offline documentation shipped by the package. |
Étienne Mollier <emollier@debian.org> | not-needed | 2026-10-17 |