| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| setup.patch | Do not check existence of third party tools since these are removed. We are using Debian packaged tools | Andreas Tille <tille@debian.org> | not-needed | 2020-05-24 | ||
| use_debian_packaged_guppy_from_pplacer.patch | Use Debian packaged guppy and hmm* An if statement is added because copy_tool_to_lib is also called for the jar that is generated before the Python part of the build. |
Andreas Tille <tille@debian.org> | not-needed | 2020-08-19 | ||
| change_java_version_for_ant.patch | More recent version of Java suppresses some warnings | Pierre Gruet <pgt@debian.org> | not-needed | https://lists.debian.org/debian-med/2020/08/msg00104.html | 2021-09-25 | |
| java_build.patch | Adapting the build.xml file of ant to Debian policy There are no embedded jars to include. The classpath thus has to be changed to include Debian-packaged jars. The .java files should not be included in the target jars. |
Pierre Gruet <pgt@debian.org> | not-needed | 2021-09-25 | ||
| configuration_files_in_etc_and_per_user.patch | using configuration files that are in /etc or in ~/.sepp | Pierre Gruet <pgt@debian.org> | not-needed | 2020-10-08 | ||
| deactivating_log_test.patch | deactivating minor test relative to log verbosity level | Pierre Gruet <pgt@debian.org> | yes | 2020-10-05 | ||
| using_python3_interpreter.patch | Marking the Python interpreter as python3 This is to conform to Debian Python policy. | Pierre Gruet <pgt@debian.org> | yes | https://www.debian.org/doc/packaging-manuals/python-policy/programs.html#interpreter-directive | 2021-09-25 | |
| hmmbuild_path_for_testUPP.patch | use Debian path of hmmbuild in testUPP | Pierre Gruet <pgt@debian.org> | not-needed | 2021-09-26 |