| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| biopython_1.71_dual_coding_support.patch | [PATCH] Fix for Biopython 1.71 dual coding support. This closes issue #73, indirectly triggered by changes in Biopython to support recent NCBI codon tables with codons which can be amino acids of stop codons. Previously the monkey-patched sub-class was breaking here: dual_coding = [c for c in stop_codons if c in forward_table] This change adds direct support for __contains__ by forwarding this to the wrapped forward table. |
peterjc <p.j.a.cock@googlemail.com> | no | https://github.com/fhcrc/seqmagick/pull/76 | 2018-05-29 | |
| pytest.patch | replace nosetests by pytest nosetests 1 is not maintained anymore and going to be removed from Debian. See https://lists.debian.org/debian-python/2021/10/msg00060.html |
Étienne Mollier <emollier@debian.org> | not-needed | 2021-11-28 | ||
| replace-ungap.patch | fix test failure due to call to deprecated ungap. | Étienne Mollier <emollier@debian.org> | yes | debian | 2024-03-17 |