| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| debian_packaged_libs.patch | Several scripts are contained in /usr/share/freebayes/scripts | Andreas Tille <tille@debian.org> | not-needed | 2022-11-01 | ||
| snpeff.config.patch | Find snpeff.config at the right place | Andreas Tille <tille@debian.org> | not-needed | 2022-11-01 | ||
| snpeff_v5.1+.patch | Work with snpeff >= 5.1 According to snpEff upstream there is a problem with poorly annotated GFF files You can read more about this in this section of the documentation: https://pcingola.github.io/SnpEff/snpeff/build_db/#step-3-checking-the-database see also snpEff Github issue #455 . In the second part of this patch the first line which invalidates the resulting vcf file is removed via sed. The problem is reported in https://github.com/pcingola/SnpEff/issues/510 but upstream has not respondet yet to this issue. FIXME: Check whether upstream mighg have a better solution for issue #510. |
Andreas Tille <tille@debian.org> | no | debian | https://github.com/pcingola/SnpEff/issues/455 | 2023-12-19 |