| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| 0002_use_debian_packaged_python-joblib.patch | We are using Debian packaged python-joblib Debian has its own way to distinguish Python versions and there is no point in doing this inside the code. . The patch is non-intrusive since it conserves the original code and uses Debian pyyaml only if the original method fails. |
Andreas Tille <tille@debian.org> | not-needed | |||
| 0101_cmake_ignore_removed_python-yaml.patch | Since we are using Debian packaged python-yaml (see 0001_use_debian_packaged_python-yaml.patch) the dir needs to be excluded |
Andreas Tille <tille@debian.org> | not-needed | |||
| 0102_cmake_ignore_removed_python-joblib.patch | Since we are using Debian packaged python-joblib (see 0002_use_debian_packaged_python-joblib.patch) the dir needs to be excluded |
Andreas Tille <tille@debian.org> | not-needed | |||
| bamtools-cmake.patch | Andreas Tille <tille@debian.org> | not-needed | ||||
| 0114_use_debian_provided_libs.patch | use more Debian packaged libraries Michael R. Crusoe <michael.crusoe@gmail.com> | Sascha Steinbiss <satta@debian.org>, | not-needed | |||
| 0118_adjust_spades_home_again.patch | Adjust spades_home var to install files under /usr/share/spades | Alex Mestiashvili <amestia@rsh2.donotuse.de> | not-needed | |||
| fix-bool-cast | Make explicit cast to bool | Michael R. Crusoe <crusoe@debian.org> | no | |||
| python3.patch | Make sure Python3 interpreter is used in scripts | Andreas Tille <tille@debian.org> | not-needed | 2019-11-12 | ||
| yaml_load.patch | Specify yaml loader see https://github.com/yaml/pyyaml/wiki/PyYAML-yaml.load(input)-Deprecation | Andreas Tille <tille@debian.org> | no | debian | 2022-10-23 | |
| debuginfo.patch | want debug info for the deb package | Juhani Numminen <juhaninumminen0@gmail.com> | not-needed | |||
| debian_bwa_zlib.patch | due to debian changes, bwa now refers to a system-wide libbwa.a and we need to manually link with zlib | Juhani Numminen <juhaninumminen0@gmail.com> | not-needed | |||
| workdir_for_test.patch | set working directory so that the test finds its data | Juhani Numminen <juhaninumminen0@gmail.com> | no | |||
| disable_local_convertutf.patch | removal of ConvertUTF.cpp makes it necessary to link spades's LLVM with system-provided LLVMSupport.a | Juhani Numminen <juhaninumminen0@gmail.com> | not-needed | |||
| typos.patch | fix typo caught by lintian. | Étienne Mollier <emollier@debian.org> | no | 2022-06-25 | ||
| use_debian_xxhash.patch | changing the path to include files of xxhash as we use the Debian-packaged one | Pierre Gruet <pgt@debian.org> | not-needed | 2024-07-04 | ||
| use_debian_cuckoo.patch | changing the path to include files of cuckoo as we use the Debian-packaged one | Pierre Gruet <pgt@debian.org> | not-needed | 2024-07-04 | ||
| samtools_missing_source.patch | adding some source files to build the samtools part, otherwise some symbols are missing at compilation time | Pierre Gruet <pgt@debian.org> | no | 2024-07-04 | ||
| deactivate_tests_with_no_data.patch | omitting many build-time tests as their data files are not shipped anymore in the source tarball | Pierre Gruet <pgt@debian.org> | no | 2024-07-04 |