Debian Patches

Status for spades/4.3.0+dfsg-2

Patch Description Author Forwarded Bugs Origin Last update
0114_use_debian_provided_libs.patch use more Debian packaged libraries Michael R. Crusoe <michael.crusoe@gmail.com>
===================================================================		 Sascha Steinbiss <satta@debian.org>, not-needed
0118_adjust_spades_home_again.patch Adjust spades_home var to install files under /usr/share/spades=================================================================== Alex Mestiashvili <amestia@rsh2.donotuse.de> not-needed
fix-bool-cast Make explicit cast to bool
===================================================================		 Michael R. Crusoe <crusoe@debian.org> no
yaml_load.patch Specify yaml loader see https://github.com/yaml/pyyaml/wiki/PyYAML-yaml.load(input)-Deprecation


===================================================================		 Andreas Tille <tille@debian.org> no debian 2022-10-23
debuginfo.patch want debug info for the deb package
===================================================================		 Juhani Numminen <juhaninumminen0@gmail.com> not-needed
workdir_for_test.patch set working directory so that the test finds its data
===================================================================		 Juhani Numminen <juhaninumminen0@gmail.com> no
typos.patch fix typo caught by lintian. Étienne Mollier <emollier@debian.org> no 2022-06-25
use_debian_xxhash.patch changing the path to include files of xxhash as we use the Debian-packaged one


===================================================================		 Pierre Gruet <pgt@debian.org> not-needed 2024-07-04
samtools_missing_source.patch adding some source files to build the samtools part, otherwise some symbols are missing at compilation time


===================================================================		 Pierre Gruet <pgt@debian.org> no 2024-07-04
fix-missing-functional-include.patch add missing <functional> include for GCC 16 Andreas Tille <tille@debian.org> no 2026-10-21
fix_config_include_paths.patch Resolve config includes relative to the config directory SPAdes' Boost property_tree based config loader resolves #include
directives relative to the current working directory. Running SPAdes from
an arbitrary directory, as unicycler and shovill do, fails with
.
Exception caught .../configs/config.info(3): cannot open include file simplification.info
.
Rewrite relative includes to absolute paths in the generated per-K configs.		 Andreas Tille <tille@debian.org> not-needed 2026-10-21
use_system_zlib.patch Use the Debian packaged zlib instead of the bundled zlib-ng SPAdes builds and statically links its bundled zlib-ng into every binary,
which makes lintian report an embedded zlib copy. Link against the system
zlib instead.		 Andreas Tille <tille@debian.org> not-needed 2026-10-21
use_system_convertutf.patch Use the ConvertUTF implementation from Debian's LLVM The ConvertUTF files shipped by this upstream release still carry the old
non-free Unicode license. They are removed from the DFSG source tarball;
link the bundled LLVM support code against Debian's LLVM instead.		 Andreas Tille <tille@debian.org> not-needed 2026-10-21
libssw1.patch Adapt to the libssw1 API libssw 1.2.5 changed Aligner::Align() to return a uint16_t status
(0 on success) and made the mask length argument mandatory.		 Andreas Tille <tille@debian.org> not-needed 2026-10-22

All known versions for source package 'spades'

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