Debian Patches
Status for umis/1.0.9-3
| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| pyhon3.12-syntax.patch | Fix Python3.12 string syntax | Andreas Tille <tille@debian.org> | yes | debian | 2024-06-12 | |
| fix_bashism.patch | Fix bashism in test script =================================================================== |
Andreas Tille <tille@debian.org> | no | 2019-04-13 | ||
| read_csv-no_squeeze.patch | Ensure compatibility with current version of pandas pandas.read_csv() no longer supports the squeeze parameter in recent versions of pandas. This parameter was deprecated and then removed in pandas version 2.0 | Andreas Tille <tille@debian.org> | yes | 2024-06-12 | ||
| dual-index-dual-umi.patch | Fix dual index and dual UMI support Distinguish dual cellular indexes from dual UMIs. Previously any dual index was treated as a dual UMI, which caused a KeyError: 'MB1' in fastqtransform when only the cellular indexes were dual (for instance with the STRT-Seq and Klein-inDrop example data). |
Rory Kirchner <roryk@alum.mit.edu> | yes | debian | 2026-10-20 | |
| test-sh-fail-on-error.patch | Make the test script fail when a command fails The test script did not stop on errors, so autopkgtest reported success even when umis crashed with a traceback. Enable set -e and let diff itself decide whether the results match instead of testing its unquoted command substitution, which produced "[: Files: unexpected operator". |
Andreas Tille <tille@debian.org> | no | debian | 2026-10-20 |