| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| use_debian_packaged_libs_for_extension.patch | use Debian packages dependencies for extension build | Sascha Steinbiss <satta@debian.org> | no | |||
| use_bwa_compatible_fermi-lite.patch | Adapt to fermi-lite which does not conflict with bwa An issue on fermi-lite upstream tracker https://github.com/lh3/fermi-lite/issues/5 suggests to take over a patch for the Debian package which would enable making it co-usable with libbwa-dev (which is needed in libseqlib). This patch adapts ariba to the potential change in fermi-lite. |
Andreas Tille <tille@debian.org> | no | 2017-02-04 | ||
| add-testdata.patch | include testdata in package | Sascha Steinbiss <satta@debian.org> | no | 2019-09-09 | ||
| disable-tests-with-internet-access.patch | disable tests that need Internet access | Sascha Steinbiss <satta@debian.org> | not-needed | 2019-09-09 | ||
| support-pymummer-0.11.patch | adapt test cases for new PyMUMmer version pymummer 0.11 uses a different internal format which is incompatible with the one assumed by Ariba. Note that ariba hard-requires an earlier version than the one in Debian. However, since Debian has updated pymummer now, we need to catch up even though upstream does not. |
Sascha Steinbiss <satta@debian.org> | no | 2020-06-30 | ||
| run-debian-spades-wrapper.patch | run Debian SPAdes wrapper Debian's /usr/bin/spades.py is not a Python script, but a wrapper around a common executable only provided for compatibility reasons. Ariba is trying to execute it explicitly as a Python script. This patch just calls the executable without forcing it through the Python interpreter. |
Sascha Steinbiss <satta@debian.org> | no | 2020-06-30 | ||
| python3.12.patch | Fix autopkgtest by replacing distutils | Andreas Tille <tille@debian.org> | no | debian | 2024-02-01 | |
| python3.12_syntax_warning.patch | Fix Python3.12 syntax warnings | Andreas Tille <tille@debian.org> | no | debian | 2024-12-04 | |
| py3.13.patch | "exec" and "eval" changed semantic in Python 3.13 "exec" and "eval" changed semantic of the default locals namespace in Python 3.13, this patch addresses this change ("exec" and "eval" usage can be avoided, but the maintainer seems to be far away). |
s3v <c0llapsed@yahoo.it> | no | debian | 2025-01-14 |