| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| py2to3.patch | Convert cuffmerge to py3, thanks to Cheng H. Lee,see https://github.com/biobuilds/cufflinks/issues/1 | Alex Mestiashvili <amestia@rsh2.donotuse.de> | no | |||
| boost1.65.patch | Fix FTBFS, boost::tr1 no longer exists. | Dimitri John Ledkov <xnox@ubuntu.com> | no | |||
| fix_gcc-7_ftbfs.patch | Fix gcc-7 build issue, thanks to Jeff Epler <jepler@unpythonic.net> | Alex Mestiashvili <mailatgoogl@gmail.com> | no | debian | https://lists.debian.org/debian-med/2017/09/msg00021.html | |
| 0004-fix-m64-usage-and-lfs.patch | Update configure.ac to not force -m64.Just because the compiler supports it, doesn't mean it can compile natively to it (e.g. on powerpc, you can compile -m64, but there are no headers for it plus it cannot run on 32-bit systems). |
Ben Collins <bcollins@ubuntu.com> | no | |||
| 0001-fix_spelling.patch | Fix spelling | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> | no | 2017-09-05 | ||
| 0002-bam2samtools.patch | bam2samtools | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> | no | 2011-12-02 | ||
| 0003-fix_includes_path.patch | fix_includes_path.patch | Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> | no | 2011-12-02 | ||
| format-security.patch | When building with --format-security (Debhelper 9 hardening) this patch is needed to build successfully | Andreas Tille <tille@debian.org> | no | 2013-05-22 | ||
| lib_eigen.patch | For some reason Eigen thinks that v.colwise().sum() cannot be treated as a one-dimensional vector, which smells like a bug in Eigen. https://github.com/cole-trapnell-lab/cufflinks/issues/61 |
Jakub Wilk <jwilk@debian.org> | no | 2016-07-12 | ||
| fix_gcc-6.1_issue_in_liblemon_code_copy.patch | Fix a build issue caused by an unmaintained code copy of liblemon. Remark: Cufflinks does not build with the current Debian packaged liblemon. If you want to try you can use the branch use_debian_packaged_liblemon in the packaging Git |
Graham Inggs <ginggs@debian.org> | no | debian | 2016-08-15 | |
| gcc10.patch | Fix FTBFS with GCC 10 curwin is declared in different source file. declare it as extern to fix multiple definition linker error. |
Reiner Herrmann <reiner@reiner-h.de> | no | debian | ||
| no_svnversion.patch | Prevent that AM_INIT_AUTOMAKE is called twice | Andreas Tille <tille@debian.org> | no | debian | 2021-11-02 | |
| gcc14.patch | fix build failure with gcc 14. This change fixes the following failure, now appearing with the new warnings gone fatal with gcc 14: . locfit/c_plot.c:470:14: error: passing argument 1 of 'setvarname' from incompatible pointer type [-Wincompatible-pointer-types] 470 | setvarname(curstr,tname); | ^~~~~~ | | | char * In file included from locfit/lffuns.h:214, from locfit/local.h:106, from locfit/c_plot.c:6: locfit/vari.hpp:16:27: note: expected 'vari *' but argument is of type 'char *' 16 | void setvarname(vari* v, varname name); | ~~~~~~^ |
Étienne Mollier <emollier@debian.org> | no | debian | 2024-08-27 |