| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| hurd | Enable building on GNU/Hurd This is a copy of the patch written for the bwa Debian package. | Michael R. Crusoe <crusoe@debian.org> | yes | |||
| hardening.patch | hardening by passing LDFLAGS | Pierre Gruet <pgt@debian.org> | not-needed | 2022-07-04 | ||
| build.patch | removing parts of build.gradle that are not useful for a Debian build | Pierre Gruet <pgt@debian.org> | not-needed | 2022-03-06 | ||
| use_bwa_from_component.patch | bwa headers are got through a component tarball, not by downloading anything. Also loading the JNI from the canonical path. |
Pierre Gruet <pgt@debian.org> | not-needed | 2022-03-30 | ||
| fix_heap_block_overrun | allocate more memory so the heap block overrun wouldn't happen (when qlen = 0). Issue was spotted by valgrind during investigation of bug https://github.com/lh3/bwa/issues/108 This is a copy of the patch written for the bwa Debian package. ====================================================================== |
Nadiya Sitdykova | no | 2017-06-30 | ||
| fix_build_on_freebsd.patch | -lrt does not help only for Linux but also for freebsd This is a copy of the patch written for the bwa Debian package. | Andreas Tille <tille@debian.org> | yes | 2015-07-10 | ||
| CVE-2019-10269.patch | Fix CVE-2019-10269. This is a copy of the patch written for the bwa Debian package. | Heng Li <lh3@me.com> | yes | debian upstream | upstream, https://github.com/lh3/bwa/commit/20d0a13092aa4cb73230492b05f9697d5ef0b88e | |
| simde | use the simde header library for greater compatibility This is a copy of the patch written for the bwa Debian package. | Michael R. Crusoe <crusoe@debian.org> | yes | |||
| gcc10.patch | Fix package to build with GCC-10 This is a copy of the patch written for the bwa Debian package. | Nilesh Patra <npatra974@gmail.com> | no | debian | upstream, https://github.com/lh3/bwa/pull/267/commits/2a1ae7b6f34a96ea25be007ac9d91e57e9d32284 | 2020-04-18 |
| missing_obj_files.patch | some .o files have to be added to libbwa.a to provide needed symbols for the shared library | Pierre Gruet <pgt@debian.org> | not-needed | 2022-07-04 |