Debian Patches

Status for gatk-bwamem/1.0.4+dfsg2-3

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Patch	Description	Author	Forwarded	Bugs	Origin	Last update
build.patch	removing parts of build.gradle that are not useful for a Debian build	Pierre Gruet <pgt@debian.org>	not-needed			2022-03-06
CVE-2019-10269.patch	Fix CVE-2019-10269. This is a copy of the patch written for the bwa Debian package.	Heng Li <lh3@me.com>	yes	debian upstream	upstream, https://github.com/lh3/bwa/commit/20d0a13092aa4cb73230492b05f9697d5ef0b88e
fix_build_on_freebsd.patch	-lrt does not help only for Linux but also for freebsd This is a copy of the patch written for the bwa Debian package.	Andreas Tille <tille@debian.org>	yes			2015-07-10
fix_heap_block_overrun	allocate more memory so the heap block overrun wouldn't happen (when qlen = 0). Issue was spotted by valgrind during investigation of bug https://github.com/lh3/bwa/issues/108 This is a copy of the patch written for the bwa Debian package. ======================================================================	Nadiya Sitdykova	no			2017-06-30
gcc10.patch	Fix package to build with GCC-10 This is a copy of the patch written for the bwa Debian package.	Nilesh Patra <npatra974@gmail.com>	no	debian	upstream, https://github.com/lh3/bwa/pull/267/commits/2a1ae7b6f34a96ea25be007ac9d91e57e9d32284	2020-04-18
hardening.patch	hardening by passing LDFLAGS	Pierre Gruet <pgt@debian.org>	not-needed			2022-07-04
hurd	Enable building on GNU/Hurd This is a copy of the patch written for the bwa Debian package.	Michael R. Crusoe <crusoe@debian.org>	yes
missing_obj_files.patch	some .o files have to be added to libbwa.a to provide needed symbols for the shared library	Pierre Gruet <pgt@debian.org>	not-needed			2022-07-04
simde	use the simde header library for greater compatibility This is a copy of the patch written for the bwa Debian package.	Michael R. Crusoe <crusoe@debian.org>	yes
use_bwa_from_component.patch	bwa headers are got through a component tarball, not by downloading anything. Also loading the JNI from the canonical path.	Pierre Gruet <pgt@debian.org>	not-needed			2022-03-30

Showing 1 to 10 of 10 entries

All known versions for source package 'gatk-bwamem'

1.0.4+dfsg2-3 (sid, trixie)
1.0.4+dfsg2-2 (bookworm)

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